Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E19
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 209 2e-54
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 207 1e-53
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 196 1e-50
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 179 2e-45
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 30 2.8
05_01_0518 + 4421314-4421346,4421427-4421767,4421960-4422619,442... 29 4.8
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 4.8
01_01_0307 + 2513678-2513772,2514064-2514682 29 4.8
06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557 29 6.4
05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062 29 6.4
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 28 8.4
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 209 bits (511), Expect = 2e-54
Identities = 98/190 (51%), Positives = 125/190 (65%), Gaps = 3/190 (1%)
Frame = +2
Query: 254 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 433
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 434 IYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLD 607
I+KDPFR+GN+ILVMCD Y EP +N R + + + + +EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 608 SDLR-XXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPS 784
D+ YYCG+GA+K F RD+V++HY+ CLYAG+ I+G N EVMP
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLYAGINISGINGEVMPG 196
Query: 785 QWEFQVGPSL 814
QWEFQVGPS+
Sbjct: 197 QWEFQVGPSV 206
Score = 31.1 bits (67), Expect = 1.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 811 IGVHAGDDLWVARYIL 858
+G+ AGD +WVARYIL
Sbjct: 206 VGISAGDQVWVARYIL 221
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 207 bits (505), Expect = 1e-53
Identities = 102/215 (47%), Positives = 130/215 (60%), Gaps = 3/215 (1%)
Frame = +2
Query: 179 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 358
V T + V L + P DKI+A YIW+ G+G LR K RT++ + P +LP
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELP 850
Query: 359 IWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQ 538
WN+DGSST QA G +S+ L P+AI+KDPFR GN+ILVMCDTY EP +N R
Sbjct: 851 KWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAA 910
Query: 539 EAYD--KCKDDEPWFGIEQEYILLDSDLR-XXXXXXXXXXXXXXXYYCGVGANKVFARDL 709
+ + K PWFGIEQEY LL D+ YYC VG++K F RD+
Sbjct: 911 QVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDI 970
Query: 710 VEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGPSL 814
+AHY+ CLYAG+ I+GTN EVMP QWE+QVGPS+
Sbjct: 971 SDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSV 1005
Score = 29.9 bits (64), Expect = 2.8
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 811 IGVHAGDDLWVARYIL 858
+G+ AGD +W++RYIL
Sbjct: 1005 VGIEAGDHIWISRYIL 1020
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 196 bits (479), Expect = 1e-50
Identities = 95/190 (50%), Positives = 120/190 (63%), Gaps = 2/190 (1%)
Frame = +2
Query: 251 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 430
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 431 AIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILL 604
AI+KDPFRRG++ILVMCD Y EP +N R S + ++ + PW+GIEQEY LL
Sbjct: 76 AIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLL 135
Query: 605 DSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPS 784
D+ YYC GA K F RD+V+AHY+ C+YAG+ I+G N EVMP
Sbjct: 136 QKDVN-------WPLGWPGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPG 188
Query: 785 QWEFQVGPSL 814
QWEFQVGPS+
Sbjct: 189 QWEFQVGPSV 198
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 811 IGVHAGDDLWVARYIL 858
+G+ A D +WVARYIL
Sbjct: 198 VGIAAADQVWVARYIL 213
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 179 bits (436), Expect = 2e-45
Identities = 84/173 (48%), Positives = 110/173 (63%), Gaps = 3/173 (1%)
Frame = +2
Query: 299 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 478
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 479 CDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILLDSDLR-XXXXXXXXXX 649
CD Y N EP +NNR + ++ K +EPW+GIEQEY LL +
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHINWPLGWPLGGYP 178
Query: 650 XXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGP 808
YYC GA+K + RD+V+AHY+ CL+AG+ I+G NAEVMP QWEFQ+GP
Sbjct: 179 GPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGP 231
Score = 31.5 bits (68), Expect = 0.90
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 808 LIGVHAGDDLWVARYIL 858
++GV AGD +WVARYIL
Sbjct: 232 VVGVSAGDHVWVARYIL 248
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 761 YRQSVRQHKDSIDSGLRQGL 702
YR+SVRQH + SG+R+GL
Sbjct: 782 YRESVRQHYAELRSGVREGL 801
>05_01_0518 +
4421314-4421346,4421427-4421767,4421960-4422619,
4422992-4423116,4423337-4423692,4423768-4423852,
4423917-4423954
Length = 545
Score = 29.1 bits (62), Expect = 4.8
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = -3
Query: 839 QRSSPACTPMRDRLGTPTVKASLQRLYRQSVRQHKDSIDSGLRQGLWQRLCWHRHRSSMA 660
++SSPAC ++L V+ S L ++ R+ + + G R+ + LCWH +SS+A
Sbjct: 191 RKSSPACAG--EKLAN--VERSSAGLGGRA-RRLSPAWEGGARRCWEEELCWHGRKSSLA 245
Query: 659 LAVGGNHPGATRRGADLNPVKYIPVLSQTR 570
G G IPV TR
Sbjct: 246 WEGGATGVGEEELAGVGKKELAIPVQGGTR 275
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 267 ARILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR 166
AR L +LY SS+LD + GEL++ PDR
Sbjct: 553 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 148 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 47
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
>06_03_0481 - 21304802-21304920,21305063-21305131,21306140-21306557
Length = 201
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 630 GPRVVSPHRKGHTTAVSVPTKSLPETLSKPTIDAVF 737
GP++ + HR H A S P P T++ T+ F
Sbjct: 159 GPKIRTAHRTVHRLAFSAPLTLFPHTVTTTTLHFFF 194
>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
Length = 456
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -3
Query: 716 LRQG-LWQRLCWHRHRSSMALA-VGG 645
LRQG WQRL W R +MA+A VGG
Sbjct: 114 LRQGGCWQRLRWRWRRFAMAVAGVGG 139
>06_01_0485 -
3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = -3
Query: 803 RLGTPTVKASLQRLYRQSVRQHKDSIDSGLRQGLWQRLCWHRHRSSMALAVGGNHP 636
+LG V+ L R SV HKD I+S ++ W H S G P
Sbjct: 189 KLGGKVVERPQHMLMRVSVGIHKDDIESAIKTYHLMSQRWFTHASPTLFNAGTPRP 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,409,344
Number of Sequences: 37544
Number of extensions: 624680
Number of successful extensions: 1760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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