Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E19
(868 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical... 245 3e-65
AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical... 245 3e-65
Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical pr... 231 4e-61
Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical pr... 223 2e-58
Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical pr... 219 3e-57
AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine syn... 208 5e-54
U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine rec... 31 1.4
L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell l... 29 4.3
AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein. 29 4.3
Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical p... 28 7.5
U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical pr... 28 7.5
L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease pr... 28 7.5
L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease pr... 28 7.5
AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered cut... 28 7.5
AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered cut... 28 7.5
AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered cut... 28 7.5
AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered cut... 28 7.5
AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered cut... 28 7.5
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 28 7.5
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 28 9.9
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 28 9.9
>AL110479-26|CAB54376.1| 385|Caenorhabditis elegans Hypothetical
protein Y105C5B.28b protein.
Length = 385
Score = 245 bits (600), Expect = 3e-65
Identities = 110/181 (60%), Positives = 128/181 (70%)
Frame = +2
Query: 266 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 445
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 30 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 89
Query: 446 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXX 625
PFR+G + LVMC+TY +PT +N R C+E +K D PWFG+EQEY LLD D
Sbjct: 90 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 149
Query: 626 XXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVG 805
YYCGVGANKV+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVG
Sbjct: 150 GWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVG 209
Query: 806 P 808
P
Sbjct: 210 P 210
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 814 GVHAGDDLWVARYIL 858
G+ GD LWVARY+L
Sbjct: 213 GIQMGDQLWVARYLL 227
>AL110479-25|CAB60321.1| 388|Caenorhabditis elegans Hypothetical
protein Y105C5B.28a protein.
Length = 388
Score = 245 bits (600), Expect = 3e-65
Identities = 110/181 (60%), Positives = 128/181 (70%)
Frame = +2
Query: 266 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKD 445
A YIWIDGSGE++R K RT +F P P+ LPIWNFDGSST QA+G +SD YL P AIY D
Sbjct: 33 ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFDGSSTGQAEGADSDVYLKPVAIYPD 92
Query: 446 PFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXX 625
PFR+G + LVMC+TY +PT +N R C+E +K D PWFG+EQEY LLD D
Sbjct: 93 PFRQGKNKLVMCETYDNKKKPTATNYRQRCKEVMEKAADQHPWFGMEQEYTLLDIDGHPF 152
Query: 626 XXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVG 805
YYCGVGANKV+ RD+VEAHYR CLYAG+ I+GTNAEVMP QWEFQVG
Sbjct: 153 GWPKNGFPGPQGPYYCGVGANKVYGRDIVEAHYRACLYAGIQISGTNAEVMPGQWEFQVG 212
Query: 806 P 808
P
Sbjct: 213 P 213
Score = 28.7 bits (61), Expect = 5.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 814 GVHAGDDLWVARYIL 858
G+ GD LWVARY+L
Sbjct: 216 GIQMGDQLWVARYLL 230
>Z82259-3|CAB05127.1| 368|Caenorhabditis elegans Hypothetical
protein C28D4.3 protein.
Length = 368
Score = 231 bits (566), Expect = 4e-61
Identities = 101/203 (49%), Positives = 132/203 (65%)
Frame = +2
Query: 206 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 385
L + + + LP K ATY+WIDG+GEHLR K RT+N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYDGSST 71
Query: 386 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 565
QADG NSD YL P A++ DPF G ++LVMCDT + M+PT +N+R C E K D
Sbjct: 72 GQADGLNSDRYLRPVAVFPDPFLGGLNVLVMCDTLDHEMKPTATNHRQMCAELMKKVSDQ 131
Query: 566 EPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAG 745
+PWFG+EQEY+++D D YYCG+GA++ F R++VE HYR CL+AG
Sbjct: 132 QPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGIGADRAFGREVVETHYRACLHAG 191
Query: 746 VPIAGTNAEVMPSQWEFQVGPSL 814
+ I G+NAEV P QWEFQ+G L
Sbjct: 192 ITIFGSNAEVTPGQWEFQIGTCL 214
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 811 IGVHAGDDLWVARYIL 858
+G+ GD LW+ARYIL
Sbjct: 214 LGIEMGDQLWMARYIL 229
>Z80223-3|CAB02317.1| 369|Caenorhabditis elegans Hypothetical
protein F26D10.10 protein.
Length = 369
Score = 223 bits (544), Expect = 2e-58
Identities = 97/200 (48%), Positives = 129/200 (64%)
Frame = +2
Query: 206 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 385
L + + + LP K ATY+WIDG+GE LR K RT N P+ + PIWN+DGSST
Sbjct: 12 LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYDGSST 71
Query: 386 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 565
QA+G NSD YL P A++ DPF +G+++LVMC+T M+PT +N+R +C K +
Sbjct: 72 GQAEGLNSDRYLRPVAVFPDPFLQGHNVLVMCETLDETMKPTATNHRQNCAAIMKKVAEH 131
Query: 566 EPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAG 745
PWFG+EQEY+++D D YYCGVGA++ F R++VE HYR CL+AG
Sbjct: 132 HPWFGMEQEYLIVDRDEHPLGWPKHGYPAPQGKYYCGVGADRAFGREVVETHYRACLHAG 191
Query: 746 VPIAGTNAEVMPSQWEFQVG 805
+ I GTNAEV P QWEFQ+G
Sbjct: 192 INIFGTNAEVTPGQWEFQIG 211
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 814 GVHAGDDLWVARYIL 858
G+ GD LW+ARYIL
Sbjct: 215 GIDMGDQLWMARYIL 229
>Z29560-1|CAA82655.1| 367|Caenorhabditis elegans Hypothetical
protein K03H1.1 protein.
Length = 367
Score = 219 bits (534), Expect = 3e-57
Identities = 98/200 (49%), Positives = 130/200 (65%)
Frame = +2
Query: 206 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSST 385
L ++ ++ L KI ATY+WIDG+GE+LR K RT + +PK +D PIWN+DGSST
Sbjct: 12 LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYDGSST 71
Query: 386 NQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDD 565
QA G +SD YL P A Y DPF G + LVMCDT + M+PT +++R +C E + +D
Sbjct: 72 GQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEIMHEIRDT 131
Query: 566 EPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAG 745
PWFG+EQEY+++D D YYC VGA++ F R++VE HYR CL+AG
Sbjct: 132 RPWFGMEQEYLIVDRDEHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAG 191
Query: 746 VPIAGTNAEVMPSQWEFQVG 805
+ I GTNAEV P QWEFQ+G
Sbjct: 192 LNIFGTNAEVTPGQWEFQIG 211
>AC006618-2|AAK68249.1| 340|Caenorhabditis elegans Glutamine
synthetase (glutamate-ammonia ligase) protein 1 protein.
Length = 340
Score = 208 bits (507), Expect = 5e-54
Identities = 88/179 (49%), Positives = 122/179 (68%)
Frame = +2
Query: 272 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPF 451
YIWID + E++R K +T +F PK P DLPIWNFDG+ST Q+ G SD Y+ P A+Y+DPF
Sbjct: 35 YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFDGTSTGQSLGEGSDVYIRPIALYRDPF 94
Query: 452 RRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDLRXXXX 631
R G + + +C+T ++ +P +N R C + +K KD EPWFG+EQE+ LL +D
Sbjct: 95 RPGPNKIALCETLTHDNKPHPTNTRQQCVDNMEKAKDQEPWFGMEQEFTLLGADKHPYNW 154
Query: 632 XXXXXXXXXXXYYCGVGANKVFARDLVEAHYRCCLYAGVPIAGTNAEVMPSQWEFQVGP 808
YYCGVG+++VF R ++EAHYR C+YAG+ I+G+N E MPSQ+E+QVGP
Sbjct: 155 PVNGFPAPQGPYYCGVGSDRVFGRHILEAHYRACMYAGIKISGSNVESMPSQFEYQVGP 213
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 814 GVHAGDDLWVARYIL 858
G+ GD LWV+RYIL
Sbjct: 216 GIEMGDQLWVSRYIL 230
>U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 29 protein.
Length = 348
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 571 GLIILAFVVSFLTTDAIVALCWLHVVFIRITHNEDVISSTEWILVNSTRYEVGIRIV 401
G I++ VVSF+TT V W VF T N + + I ST E+ ++ V
Sbjct: 27 GFILMIIVVSFITTALAVQTLWYKNVFPFCTKNLLLSAIVNGIFHQSTVAEIRLKTV 83
>L23648-7|AAA28031.2| 962|Caenorhabditis elegans Abnormal cell
lineage protein 36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 618 APSGGPRVVSPHRKGHTTAVSVPTKSLPETLSKPT 722
A S PR H KG + S P + +PETLS+ T
Sbjct: 91 ASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMT 125
>AF104917-1|AAD22772.1| 962|Caenorhabditis elegans LIN-36 protein.
Length = 962
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 618 APSGGPRVVSPHRKGHTTAVSVPTKSLPETLSKPT 722
A S PR H KG + S P + +PETLS+ T
Sbjct: 91 ASSSQPREEIIHGKGESVYSSFPCQVIPETLSRMT 125
>Z74038-8|CAD21642.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 559 LAFVVSFLTTDAIVALCWLH 500
LA V+SFLT AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256
>Z72507-16|CAC35887.1| 540|Caenorhabditis elegans Hypothetical
protein F17C11.12 protein.
Length = 540
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 559 LAFVVSFLTTDAIVALCWLH 500
LA V+SFLT AI+ L +LH
Sbjct: 237 LALVISFLTVPAIIMLAFLH 256
>U80442-3|AAB37665.1| 333|Caenorhabditis elegans Hypothetical
protein T20F5.4 protein.
Length = 333
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 610 RSAPLRVAPGWFPPTARAILLRCRCQQSLCQRPC--RSP 720
+ APLR +P PP RA+ + + Q Q PC RSP
Sbjct: 261 KPAPLRFSPARSPPVRRALPIELKPTQHFAQ-PCKIRSP 298
>L29439-1|AAA98751.1| 658|Caenorhabditis elegans endoprotease
protein.
Length = 658
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>L29438-1|AAA98750.1| 684|Caenorhabditis elegans endoprotease
protein.
Length = 684
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>AF039719-6|AAO12410.1| 666|Caenorhabditis elegans Blistered
cuticle protein 4, isoformf protein.
Length = 666
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>AF039719-5|AAB96755.1| 699|Caenorhabditis elegans Blistered
cuticle protein 4, isoforme protein.
Length = 699
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>AF039719-4|AAB96753.1| 670|Caenorhabditis elegans Blistered
cuticle protein 4, isoforma protein.
Length = 670
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>AF039719-3|AAB96756.1| 730|Caenorhabditis elegans Blistered
cuticle protein 4, isoformb protein.
Length = 730
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>AF039719-2|AAB96757.1| 827|Caenorhabditis elegans Blistered
cuticle protein 4, isoformc protein.
Length = 827
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered
cuticle protein 4, isoformd protein.
Length = 942
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 443 DPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCKDDEPWFGIEQEYILLDSDL 616
DPF ++ L +T + R+ A + ++ P ++++YILLD+D+
Sbjct: 68 DPFLDTHYFLYHSETTRTRRHKRAIVERLDSHPAVEWVEEQRPKKRVKRDYILLDNDV 125
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 685 QQSLCQRPCRSPLSMLSLCWRTDCRYKR*SDAFTVGVPSRS 807
++ L RPCR LS++ C D K AF VG+P++S
Sbjct: 391 EKCLGSRPCRDILSLMYSCGMYDYSGK---FAFQVGLPAKS 428
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 119 KMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLP 250
K + HT E P+IL P++ + P + + +N+L P
Sbjct: 375 KQEEQEHTNGEKKPEILDEPIIQDEPRTMRPHEHCAIFNNLSTP 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,911,778
Number of Sequences: 27780
Number of extensions: 509491
Number of successful extensions: 1410
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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