Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E18
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    27   2.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   4.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   5.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   7.6  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 365 EEPVIRATYKNSTGKIVNVLYYGS 436
           EE V+R TY+ S   +  VLYY S
Sbjct: 268 EEAVVRETYEESGVDVEKVLYYAS 291


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -1

Query: 788 IKRTFNYKDKCRVINGMSLKPNSHSI*IITEIKQIAFDIDPVLMFEHTIRASLSSGHNI 612
           ++R   +   CR+       P SH I  I EI + AFD+     + H I    +SG  I
Sbjct: 169 VRRLLEFVCSCRLPASKYDHPRSHYIRRICEIIRDAFDLGD--FYNHRILRVFNSGDQI 225


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 655 SSTQSGLPSLPVIISIPSTILLTVDSEPKSLDNSTLRPSDEQLMP 521
           S TQS  P  P    +P+T    V+ EP S   S  RPS  + +P
Sbjct: 414 SQTQSSTPRKP----LPTTTSPKVNPEPHSESISDTRPSTPRKVP 454


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 203 SLRCCNN*GIALHCSAIC 150
           SL C +N G++L+CS+ C
Sbjct: 201 SLSCLDNTGVSLNCSSSC 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,089,281
Number of Sequences: 5004
Number of extensions: 61673
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)