Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E18
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)              30   2.7  
SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)                       29   4.7  
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_2078| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)
          Length = 233

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 251 WPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSEE 370
           WP +   R AC+V+ F+K  T E ET  N  + LS PS +
Sbjct: 194 WPYDHCLRTACKVEQFEK--TVEKETKCNDKTLLSPPSSK 231


>SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)
          Length = 221

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 190 VITKALRFTAPRYATINRAEKRSDYQKEHHSFH 92
           V+T A R      ATI + ++ SD QK +HS+H
Sbjct: 33  VVTIATRRYKHYDATIRQIKRHSDDQKNYHSYH 65


>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 692  KQIAFDIDPVL-MFEHTIRASLSSGHNIYTVHDPFDSRQRA*ELGQQHAAPLRRAID 525
            K++ F I     +++H ++  LSS    Y +HD      R  E   +H A LR+ +D
Sbjct: 963  KRLMFGISSATELYQHIVQQVLSSCEGTYNIHDDIIVHGRTVE---EHHARLRKTLD 1016


>SB_2078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 253 PVIDRVHLSR*RIQIKVLFVVVITKALRFTAPRYATINRAEKRSDYQKEHHSFHVIR 83
           PV+  +H    R ++K   +++  KAL+  APRY   N A       K   +  V R
Sbjct: 115 PVLRNLHWLPVRYRVKFKILLITFKALQGLAPRYIIKNNARYSLRSNKRRKNDEVFR 171


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 336 TAARTSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATRTSLSTYSPGXNEDY 515
           T A TSA+   + S+     T+   S  +    +    T T P TR + STY+      Y
Sbjct: 132 TIANTSANTSANTSANTSANTSANTSANTSANTSTDTSTDTSPDTRANTSTYTSANTRTY 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,207,969
Number of Sequences: 59808
Number of extensions: 462487
Number of successful extensions: 1558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)