Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E18
(836 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 30 2.3
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine r... 29 3.1
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cycl... 28 7.2
AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical ... 28 7.2
AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor typ... 28 7.2
AF047663-1|AAC04453.2| 322|Caenorhabditis elegans Delta/serrate... 28 9.5
>M77697-3|AAA27898.3| 616|Caenorhabditis elegans Hypothetical
protein B0303.4 protein.
Length = 616
Score = 31.9 bits (69), Expect = 0.58
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 305 LDTYEIETARNGCSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKNFYRSCDKDVAK 484
LD E+E + SE PVI S GKI+ L + +D+ KN Y S + VAK
Sbjct: 311 LDDQEVEAQPEQVLQETKESEFPVIEGP---SEGKILIKLKFMNDTEKNTYASLEDTVAK 367
Query: 485 Y 487
+
Sbjct: 368 F 368
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 303 NSIHTK*KPLGTAARTSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATRT 476
+++ T KP+ TA R++A + +++S AP K+ T+ T+ T+T P T T
Sbjct: 105 STLKTTTKPVITATRSTARITTTKASTLEPPEAPTKASTARTISTT--ETTTSPPTTT 160
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 339 AARTSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATRTSLSTYS 494
A+ TS S Q S +SGP T + P+ + S T++GP+T + ST S
Sbjct: 543 ASTTSGSTQ-STTSGPSTSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTS 593
>AF067613-11|AAN73862.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein19 protein.
Length = 334
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/79 (16%), Positives = 34/79 (43%)
Frame = +2
Query: 71 YNVLSNNMETVVFFLIITSFFCAINCRISRSSEAQCLSYYNNEENFDLDTLSGQMYAVYY 250
Y++ N++E ++ L I +FC++ + + L + L+ + +Y+
Sbjct: 94 YDIFGNSIENAIYGLTIVMWFCSVTVLVGLTEAFNILLFL----------LAVSRFTIYF 143
Query: 251 WPPNQRTRNACEVQTFKKL 307
WP ++ + K++
Sbjct: 144 WPTTEKVVKILQTNGHKRV 162
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
B0207.5 protein.
Length = 3279
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 194 NEENFDLDTLSGQMYAVYYWPPNQRTRNACEVQTFKKLDTYEIETARNGC 343
N E D+DTLS + Y+ + QR C+ ++++ E E R C
Sbjct: 1722 NCETVDVDTLSDKEYSRFQKECRQRPEFECKDAKVERMNAQEYEEYRKKC 1771
>AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cyclase
protein 23 protein.
Length = 1043
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 233 MYAVYYWPPNQRT-RNACEVQTFKKLDTYEIETARNGCSNLSL 358
+YA +Y PPN T R CE++ + +T NGC L +
Sbjct: 354 VYAAFYVPPNSDTVRKVCELEPVMLTNCDGTKTG-NGCYELQV 395
>AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical
protein C32F10.4 protein.
Length = 316
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -2
Query: 655 SSTQSGLPSLPVIISIPSTILLTVDSEPKSLDNSTLRPSDEQLMPRM*SSLXPGEYVLSD 476
SST S +S P IL +SEP DNS ++ PR ++ P Y SD
Sbjct: 248 SSTTSASTRSGSFVSTP--ILTVANSEPTGADNSAFTNDEDPTRPR--ATSRPPAY--SD 301
Query: 475 VLVAGPVEV 449
V+ G + V
Sbjct: 302 VVEPGHITV 310
>AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1073
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 233 MYAVYYWPPNQRT-RNACEVQTFKKLDTYEIETARNGCSNLSL 358
+YA +Y PPN T R CE++ + +T NGC L +
Sbjct: 384 VYAAFYVPPNSDTVRKVCELEPVMLTNCDGTKTG-NGCYELQV 425
>AF047663-1|AAC04453.2| 322|Caenorhabditis elegans
Delta/serrate/lag-2 domain protein2 protein.
Length = 322
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 CSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKN-FY 457
C N++ P E P R + GKI VL + VKN FY
Sbjct: 209 CQNVTFPPEMPKFRTVMLGANGKIFKVL-ENKNLVKNEFY 247
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,372
Number of Sequences: 27780
Number of extensions: 354754
Number of successful extensions: 1151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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