Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E12
(842 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 31 1.2
SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 30 2.7
SB_49105| Best HMM Match : NDK (HMM E-Value=5.5) 29 3.6
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45724| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 8.2
SB_4132| Best HMM Match : cNMP_binding (HMM E-Value=5.9e-14) 28 8.2
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 32.7 bits (71), Expect = 0.38
Identities = 24/91 (26%), Positives = 37/91 (40%)
Frame = -3
Query: 744 REPHEPHTEALLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSLQTEGVRFLRSLQ 565
RE + H L S PVL L LL+ + +LL+ G + E +LR
Sbjct: 2090 REDKDSHVSHLTSGPVL------ALSLLRENAVGKLLEVVGPSCPQVAHKESQFYLRGSY 2143
Query: 564 GSQGVLRTMQLLQVQSVALRFSRSLWHPSLC 472
G+ + + S ++R L+H LC
Sbjct: 2144 GTDRIRNAIYASPSYSASVRDHMLLFHDGLC 2174
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 299 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 168
GSIF D VS NH L + R + L C+ER++G D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347
>SB_48379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 566 WRLRRKRTPSVWRLRRKRTPSVWRSR 643
WR + R VWR + R VWRS+
Sbjct: 41 WRSKNNRLGGVWRSKNNRLGGVWRSK 66
Score = 30.7 bits (66), Expect = 1.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 566 WRLRRKRTPSVWRLRRKRTPSVWRSR 643
WR + R VWR + R VWRS+
Sbjct: 52 WRSKNNRLGGVWRSKNNRLGGVWRSK 77
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 566 WRLRRKRTPSVWRLRRKRTPSVWRS 640
WR + R VWR + R VWRS
Sbjct: 63 WRSKNNRLGGVWRSKNNRLGGVWRS 87
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 566 WRLRRKRTPSVWRLRRKRTPSVWRSR 643
WR + + VWR + R VWRS+
Sbjct: 30 WRSKNNKLGGVWRSKNNRLGGVWRSK 55
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 222 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 347
Q+ D MYEV+I + +RK+ R+ D E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802
>SB_49105| Best HMM Match : NDK (HMM E-Value=5.5)
Length = 92
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/87 (25%), Positives = 35/87 (40%)
Frame = -3
Query: 732 EPHTEALLSSPVLPQRRQEVLDLLKHQPIYRLLQTEGVRFLRSLQTEGVRFLRSLQGSQG 553
+ H L S PVL L LL+ + +LL+ G + E +LR G+
Sbjct: 1 DSHVSHLTSGPVL------ALSLLRENAVGKLLEVVGPSCPQVAHKESQFYLRGSYGTDR 54
Query: 552 VLRTMQLLQVQSVALRFSRSLWHPSLC 472
+ + S ++R L+H LC
Sbjct: 55 IRNAIYASPSYSASVRDHMLLFHDGLC 81
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 216 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 353
GP + + +G W S R +T P KV + PGI NG Y
Sbjct: 84 GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130
>SB_45724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 532 QLHCTQHPL-ATLEATEETYPLRLEATEETYPLRLE 636
+L T +P LE T Y LRLE T Y LRLE
Sbjct: 118 RLELTANPYNLRLELTANPYNLRLELTSNPYNLRLE 153
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 312 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 464
+ I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_4132| Best HMM Match : cNMP_binding (HMM E-Value=5.9e-14)
Length = 193
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -3
Query: 759 GSWHLREPHEPHTEALLSSPVLPQRRQEVLDLLKHQPIYRLL 634
GS+H EP + + EAL +S VL ++++ + + P + L+
Sbjct: 84 GSFHSEEPSKFYIEALENSTVLQIQKEDQIRMFVDYPKFNLI 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,088,766
Number of Sequences: 59808
Number of extensions: 537722
Number of successful extensions: 1693
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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