Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E10
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.76 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   9.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 12/57 (21%), Positives = 26/57 (45%)
 Frame = -3

Query: 488 NIDNIQLYRNKFITYSRTKILYFLILLVKLDVTYNYCVRWRPSDGVYGNITSKISFF 318
           ++ +  ++R   + Y+     Y + L+ K  V Y+  V W+P      + +  + FF
Sbjct: 104 HVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFF 160


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 53  NEVTEK-DIRF*QHCNVRRHLGWCC 124
           +E+ E  D +F Q C  RRH   CC
Sbjct: 332 DEIRESLDTQFLQVCRSRRHSDSCC 356


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 337 HLKSHFLNNM*HSNTIGVSSNKKCVL 260
           HL+  F N + H NT+ V   KK V+
Sbjct: 258 HLELTFENILSHINTVYVLRTKKGVM 283


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 101 LHYNVVKIECPFLSLRFRIDRKEGKI*RHN 12
           L  +   I C F  ++ + DR+ GK    N
Sbjct: 361 LDCHTAHIACKFADIKEKCDRRNGKTTEEN 390


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 337 HLKSHFLNNM*HSNTIGVSSNKKCVL 260
           HL+  F N + H NT+ V   KK V+
Sbjct: 258 HLELTFENILSHINTVYVLRTKKGVM 283


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 101 LHYNVVKIECPFLSLRFRIDRKEGKI*RHN 12
           L  +   I C F  ++ + DR+ GK    N
Sbjct: 361 LDCHTAHIACKFAEIKEKCDRRTGKTTEEN 390


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 101 LHYNVVKIECPFLSLRFRIDRKEGKI*RHN 12
           L  +   I C F  ++ + DR+ GK    N
Sbjct: 72  LDCHTAHIACKFAEIKEKCDRRTGKTTEEN 101


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +3

Query: 108 ILAGVARSKFYCSSFIIELSKCLSYCNIVCKEYI 209
           +L  +    FY  S  +  S    YCNIV    +
Sbjct: 337 VLGAIGSIVFYIISRYVFRSALEDYCNIVATHLV 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,581
Number of Sequences: 438
Number of extensions: 3523
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)