Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E09
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    28   1.9  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    27   3.3  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    27   3.3  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    26   5.7  
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.5  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   10.0 
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   10.0 

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 128 NSLAKMSSALESNQTINSSMDISQCDSNESTETIKT 235
           N L ++   + S +T N+SM+   CDSNE+  T+ +
Sbjct: 112 NLLLRLQGRMNSART-NTSMNPYSCDSNENLSTLSS 146


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 545 LEIIITLKCLRHISDSFLELEPILIGKSNKTIESLDNKIENSVEVLNETYTE 700
           L  I +L  +RH  D+ +ELE +++GK  K +  +   +E+ ++ L +   E
Sbjct: 119 LREIESLSSIRH--DNIVELEKVVVGKDLKDVYLVMEFMEHDLKTLLDNMPE 168


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 584 SDSFLELEPILIGKSNKTIESLDNKIENSVEVLNETYTEVVGTLKNALSIRNAK 745
           S S + +   L+ ++ K I  L  + + SVEV+NE Y    G   + +   N K
Sbjct: 397 SSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNERYKRKKGLKDSDVKSENIK 450


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 101 VPNKKIEYFNSLAK-MSSALESNQTINSSMDISQCDSNESTETIKTKQYL 247
           V N  + YF   AK + +A++  Q  NSS  +  C+SNE    +  K +L
Sbjct: 514 VSNINLGYFEDAAKHLLAAIDIIQ--NSSTSMESCESNEELWEMLRKVFL 561


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 143 MSSALESNQTIN-SSMDI-SQCDSNESTETIKTKQ 241
           M  ++E+   +N S + I S CD   S ET+KTK+
Sbjct: 7   MQMSVETETVLNVSQVQIPSSCDRKASLETLKTKK 41


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 131 SLAKMSSALESNQTINSSMDISQCDSNESTETI 229
           +L  +S  LE+ QT+ S+M  S   S  STE +
Sbjct: 533 NLTAISETLENGQTLKSNMASSIEKSKTSTEVV 565


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 706 WYPEECIVNSKCQRIFYIFTXICYCNSHRQC 798
           W+P  CI +SK Q  F  F      + + QC
Sbjct: 49  WFPTSCIDSSKIQNFFSSFHSSNEKDPNAQC 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,138
Number of Sequences: 5004
Number of extensions: 58718
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)