Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E09
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 31 1.5
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 30 2.0
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 29 4.5
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487... 29 4.5
02_05_1187 + 34820577-34820757,34820930-34820961,34832101-348321... 29 4.5
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 28 7.9
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 28 7.9
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 377 EALRKLRTLCPKIHWIGITDSHVVGCGSSGMCIWTEIDNQPL-GPFWFQIKSLKFKELEI 553
E L+ L P +W +++SH+V GS CI + L G ++ QI +F L
Sbjct: 592 ELLKTWMELSPPKNWWDLSNSHLVSLGSGRFCIARFFYTRHLMGYYYDQIVDNRFVVLTG 651
Query: 554 IITLKCLRHIS 586
+ + C+ S
Sbjct: 652 VDVVPCVHDTS 662
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +2
Query: 293 RRLIDERIGYRDIVLLSTAEVELKNDLTEALRKLRTLCPKIHWIGITDSHVVGCGSSGMC 472
+RLI + + ++++ E+E+ + + R++ T + + GI D HVV S +
Sbjct: 343 QRLISRNTDFAERMIITLQELEIATNNFDKSREVGTGGHGVVYKGIIDLHVVAIKKSKIV 402
Query: 473 IWTEID 490
+ EID
Sbjct: 403 VQREID 408
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 29.1 bits (62), Expect = 4.5
Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Frame = +2
Query: 377 EALRKLRTLCPKIHWIGITDSHVVGCGSSGMCIWTEIDNQP-LGPFWFQIKSLKFKELEI 553
+AL K+ C ++H + S+ + D QP LGP F ++ FK L
Sbjct: 524 DALFKMGPACKELHGYYMEKSNARRKNRETSMLGQH-DGQPFLGPTAFI--AVDFKYLR- 579
Query: 554 IITLKCLRHISDSFLELEPIL----IGKSNKTIESLDNKIENSVEVLNETYTEVVGTLKN 721
L +R I + L+ +L + + + LD + N + N+ +VG +KN
Sbjct: 580 --DLYRVRAIDTNLLKCYSLLTWKHVHRKAPHVALLDPAVVNKTTLKNDR-ANMVGYIKN 636
Query: 722 ALSIRNAKEF----FTFLLXFVIAIVTGSVSFVNFIGNXI 829
L +R K+F + +++ ++T S V+++ + I
Sbjct: 637 CLLVRQDKDFIMCAYNQQQHWILLVITPKWSLVHYLNSNI 676
>03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,
48730-48840,48935-49195,49415-49638,49735-49855,
50673-51214,51302-51488,51569-51895,52047-52197,
52287-52424,52918-53013,53276-53357,54411-54679,
54769-54882,55050-55288,55488-55715,55799-55951,
56479-56616,57061-57188,57598-57718,58142-58306,
59486-59633,59772-59898,60025-60118,60119-60268,
60577-60624,60712-60819,61040-61114,61225-61275,
61341-61487,61584-61714,61944-62031,62204-62266,
62336-62582,62830-62981,63056-63126,63214-63370,
63520-63687
Length = 2323
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +2
Query: 545 LEIIITLKCLRHISDSFLELEPILIGKSN------KTIESLDNKIENSVEVLNETYTEVV 706
L+ +++ C R ++S L++ L +S IESL+N ENSV + V+
Sbjct: 1515 LDSLLSFSCCRGENESLLKMLYPLFSESTLRSIFVDIIESLENAGENSVLAILRCVRSVL 1574
Query: 707 GTLKNALSIRN 739
G L ++ RN
Sbjct: 1575 GLLHFSMRTRN 1585
>02_05_1187 +
34820577-34820757,34820930-34820961,34832101-34832159,
34832772-34833183
Length = 227
Score = 29.1 bits (62), Expect = 4.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 428 ITDSHVVGCGSSGMCIW 478
+ D HVVG G G CIW
Sbjct: 58 LADGHVVGQGDRGQCIW 74
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.3 bits (60), Expect = 7.9
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 341 STAEVELKNDLTEALRKLRTLCPKIHWIGITDSHVVGCGSSGMCIWTEIDNQPLGP-FWF 517
S +ELK + + + +K P+I W S + G C W D GP F
Sbjct: 457 SPCGIELKGEKSASFQKPVLADPRISWREGLVSRMFDMGDLDCCKWWSDDED--GPVFQG 514
Query: 518 QIKSLKFKELEIIITLKCLRHISD 589
++L+ EL+ +I CL+ D
Sbjct: 515 NEEALRDTELQSVIP-SCLQECGD 537
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 548 EIIITLKCLRHISDSFLELEPILIGKSNKTIE-SLDNKIENSVEVLNETYTEVVGTL 715
+++ + L+H+ D F+ P+ K+N+ + SL ++ SV++ E TEV+ L
Sbjct: 380 QLLAKAQQLQHLLDRFIACRPVGAAKTNRVVSVSLYPLVKESVQLYCE-LTEVMAAL 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,210,166
Number of Sequences: 37544
Number of extensions: 308368
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -