Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E09
         (831 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    32   0.44 
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    29   4.1  
AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical ...    29   5.4  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL033536-10|CAN86926.1|  345|Caenorhabditis elegans Hypothetical...    28   7.1  
AL033536-9|CAA22140.1|  344|Caenorhabditis elegans Hypothetical ...    28   7.1  
AL032639-5|CAA21629.1|  342|Caenorhabditis elegans Hypothetical ...    28   7.1  
U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop heli...    28   9.4  
U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop heli...    28   9.4  
AL161711-4|CAC44301.2|  301|Caenorhabditis elegans Hypothetical ...    28   9.4  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 350 EVELKNDLTEALRKLRTLCPKIHWIGITDSHVVGCGSSGMCIWTEIDNQPLGP 508
           E + ++++ + LRK RT+      +G   SH  G G S   + +  D Q +GP
Sbjct: 86  EEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGP 138


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 566 KCLRHISDSFLELEPI----LIGKSNKTIESLDNKIENSVEVLNETYTEVVGTLKNALSI 733
           KC+  I DSF     +     IG     + S D   E  +EVL ETY      ++  L+ 
Sbjct: 113 KCVYRIGDSFNAKVSVKIRKAIGNCKSVLRSFDKSNEIGLEVLIETYWAEYYVMREVLTT 172

Query: 734 RNA 742
           ++A
Sbjct: 173 QSA 175


>AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical
           protein F43C11.6 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 620 GKSNKTIESLDNKIENSVEVLNETYTEVVGTLKN 721
           G S+K +E   +KI+  V+ +NE Y + +  LKN
Sbjct: 214 GNSSKKLEKCISKIDFCVKKVNEGYQKTIEKLKN 247


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
           protein Y46G5A.4 protein.
          Length = 2145

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 677 VLNETYTEVVGTLKNALSIRNAKEFFTFLLXF 772
           +  +  TEV+G LKNA   R+A+     LL F
Sbjct: 278 IAQQKQTEVIGILKNAADDRDAENQLVLLLGF 309


>AL033536-10|CAN86926.1|  345|Caenorhabditis elegans Hypothetical
           protein Y53C10A.6b protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 539 KELEIIITLKCLRHISDSFLELEPILIGKSNKTIESLDNKIE 664
           K+LE   T   L  +SD   E   +L+ KS KT+  +D KIE
Sbjct: 191 KDLEAFETDN-LMDLSDEQKEFINVLLDKSTKTVPQIDAKIE 231


>AL033536-9|CAA22140.1|  344|Caenorhabditis elegans Hypothetical
           protein Y53C10A.6a protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +2

Query: 539 KELEIIITLKCLRHISDSFLELEPILIGKSNKTIESLDNKIE 664
           K+LE   T   L  +SD   E   +L+ KS KT+  +D KIE
Sbjct: 191 KDLEAFETDN-LMDLSDEQKEFINVLLDKSTKTVPQIDAKIE 231


>AL032639-5|CAA21629.1|  342|Caenorhabditis elegans Hypothetical
           protein Y38F1A.4 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 734 RNAKEFFTFLLXFVIAIVTGSVSFVNFI 817
           RNAK+F  FL   +I  V G +SF+ ++
Sbjct: 164 RNAKQFVCFLADSIIKGVCGVLSFIGYL 191


>U55375-6|AAC69046.2|  431|Caenorhabditis elegans Hypothetical
           protein K03E6.7 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 284 YLERRLIDERI--GYRDIVLLSTAEV-ELKNDLTEALRKLRTLCPKIH 418
           Y E+RL   +I    +  +L   AEV + KND T +LR L  +  +IH
Sbjct: 203 YFEKRLEFTKILEAQKATILCLEAEVRQKKNDYTTSLRNLERISERIH 250


>U41279-6|AAK31423.1|  321|Caenorhabditis elegans Helix loop helix
           protein 27 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +2

Query: 491 NQPLGPFWFQIKSLKFKELEIIITLKCLRHISD-----SFLELEPILIGKSNKTIESLDN 655
           N+ +G +  ++K  +   LEIII    ++H SD     +  ++ P+L GKS  T E+ +N
Sbjct: 174 NKQMGSYEQRLKLERITILEIIIDY--IKHNSDLLYPETIPQILPLLAGKSTATCENKEN 231

Query: 656 K 658
           +
Sbjct: 232 E 232


>U41279-4|AAK31421.1|  313|Caenorhabditis elegans Helix loop helix
           protein 25 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
 Frame = +2

Query: 491 NQPLGPFWFQIKSLKFKELEIIITLKCLRHISD-----SFLELEPILIGKSNKTIESLDN 655
           N+ +G +  ++K  +   LEIII    ++H SD     +  ++ P+L GKS  T E+ +N
Sbjct: 166 NKQMGSYEQRLKLERITILEIIIDY--IKHNSDLLYPETIPQILPLLAGKSTATCENKEN 223

Query: 656 K 658
           +
Sbjct: 224 E 224


>AL161711-4|CAC44301.2|  301|Caenorhabditis elegans Hypothetical
           protein Y10G11A.1 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 296 RLIDERIGYRDIVLLSTAEVELKNDLTEAL 385
           +L+D+ + Y DIVL+    +++ N + EA+
Sbjct: 266 KLVDKYLNYFDIVLVDDQSMDIPNQILEAI 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,567
Number of Sequences: 27780
Number of extensions: 322412
Number of successful extensions: 846
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)