Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E08
         (582 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep: Zgc:...    80   3e-14
UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit...    74   2e-12
UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep...    45   0.001
UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3; Magnoliophyt...    36   0.92 
UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit...    35   1.6  
UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus lu...    34   2.1  
UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:...    33   6.5  

>UniRef50_Q6DGH3 Cluster: Zgc:92922; n=13; Euteleostomi|Rep:
           Zgc:92922 - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 97

 Score = 80.2 bits (189), Expect = 3e-14
 Identities = 41/84 (48%), Positives = 45/84 (53%)
 Frame = +1

Query: 94  SRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSXXXXXXXXX 273
           SRSP+K  A PRTA                        G+GGMWRFYT+DS         
Sbjct: 15  SRSPSKTVA-PRTAGTSARQRKATSSSARSGGRSTASAGTGGMWRFYTEDSPGLKVGPVP 73

Query: 274 XXXMSLLFIASVFMLHIWGKYTRA 345
              MSLLFIASVFMLHIWGKYTR+
Sbjct: 74  VLVMSLLFIASVFMLHIWGKYTRS 97


>UniRef50_P60468 Cluster: Protein transport protein Sec61 subunit
           beta; n=31; Eukaryota|Rep: Protein transport protein
           Sec61 subunit beta - Homo sapiens (Human)
          Length = 96

 Score = 74.1 bits (174), Expect = 2e-12
 Identities = 39/83 (46%), Positives = 44/83 (53%)
 Frame = +1

Query: 97  RSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSXXXXXXXXXX 276
           RSP+KA A    A+G                      G+GGMWRFYT+DS          
Sbjct: 16  RSPSKAVAA--RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPV 73

Query: 277 XXMSLLFIASVFMLHIWGKYTRA 345
             MSLLFIASVFMLHIWGKYTR+
Sbjct: 74  LVMSLLFIASVFMLHIWGKYTRS 96


>UniRef50_Q5BSB6 Cluster: SJCHGC05179 protein; n=3; Bilateria|Rep:
           SJCHGC05179 protein - Schistosoma japonicum (Blood
           fluke)
          Length = 88

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 27/84 (32%), Positives = 35/84 (41%)
 Frame = +1

Query: 94  SRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGGMWRFYTDDSXXXXXXXXX 273
           S S   A+A PR + G                          ++ FY++DS         
Sbjct: 6   SASSKSATASPRGSGGGARQRKAPAASARRPVAPTAQKNP--VFLFYSEDSPGIKVGPVP 63

Query: 274 XXXMSLLFIASVFMLHIWGKYTRA 345
              MSL FI SVF+LH WGKYTR+
Sbjct: 64  VLVMSLCFIVSVFLLHFWGKYTRS 87


>UniRef50_Q0JLV5 Cluster: Os01g0565900 protein; n=3;
           Magnoliophyta|Rep: Os01g0565900 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 80

 Score = 35.5 bits (78), Expect = 0.92
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 208 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGKYTR 342
           G+  M +FYTD++            MS+ FIA V +LH++GK  R
Sbjct: 33  GASTMLQFYTDEAAGRKMSPNSVLIMSIGFIAVVALLHVFGKLYR 77


>UniRef50_P38389 Cluster: Protein transport protein Sec61 subunit
           beta; n=13; Magnoliophyta|Rep: Protein transport protein
           Sec61 subunit beta - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 82

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 211 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 333
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>UniRef50_A4RRJ9 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 76

 Score = 34.3 bits (75), Expect = 2.1
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +1

Query: 208 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 333
           GSG + RFYTD+S            MS+ FI  V MLH   K
Sbjct: 25  GSGSLLRFYTDESPGLKITPVVVLGMSVCFIGFVTMLHAIAK 66


>UniRef50_A6R5C2 Cluster: Predicted protein; n=4; Ascomycota|Rep:
           Predicted protein - Ajellomyces capsulatus NAm1
          Length = 285

 Score = 32.7 bits (71), Expect = 6.5
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
 Frame = +1

Query: 100 SPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXGSGG----MWRFYTDDSXXXXXXX 267
           SPT    GPRTA                        G+GG    M + YTD+S       
Sbjct: 199 SPTPPG-GPRTAMRRRAAADHKESIRNARPASTRSAGAGGSSGTMLKLYTDESPGLKVDP 257

Query: 268 XXXXXMSLLFIASVFMLHIWGKYTR 342
                +SL FI SV  LH+  K +R
Sbjct: 258 VVVLVLSLGFIFSVVGLHVIAKISR 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 489,804,431
Number of Sequences: 1657284
Number of extensions: 8181923
Number of successful extensions: 12943
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12942
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)