Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E08
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    30   0.016
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    27   0.15 

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 29.9 bits (64), Expect = 0.016
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 113 AFVGDLLPRSYRGSTRRLRHFYSNVVKLYFKS 18
           A + +++P+SY G+T  L+ FY  V K+  +S
Sbjct: 50  ALLQEIIPKSYFGTTTNLKRFYKVVEKILTQS 81


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 113 AFVGDLLPRSYRGSTRRLRHFY 48
           A + +++P+SY G+T  L+ FY
Sbjct: 50  ALLQEIIPKSYFGTTTNLKRFY 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,747
Number of Sequences: 336
Number of extensions: 2361
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)