Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E08
         (582 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p pro...    73   4e-13
AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta pr...    73   4e-13
AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-P...    73   4e-13
BT003500-1|AAO39504.1| 1169|Drosophila melanogaster RE45036p pro...    29   6.1  
AE013599-158|AAF57274.2| 1169|Drosophila melanogaster CG11212-PA...    29   6.1  

>AY071155-1|AAL48777.1|  100|Drosophila melanogaster RE18615p
           protein.
          Length = 100

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 41/88 (46%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +1

Query: 91  GSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXG---SGGMWRFYTDDSXXXXX 261
           GSRSP+K SA     SG                      G   +GGMWRFYTDDS     
Sbjct: 13  GSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMWRFYTDDSPGIKV 72

Query: 262 XXXXXXXMSLLFIASVFMLHIWGKYTRA 345
                  MSLLFIASVFMLHIWGKY R+
Sbjct: 73  GPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AJ249754-1|CAB56698.1|  100|Drosophila melanogaster sec61beta
           protein protein.
          Length = 100

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 41/88 (46%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +1

Query: 91  GSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXG---SGGMWRFYTDDSXXXXX 261
           GSRSP+K SA     SG                      G   +GGMWRFYTDDS     
Sbjct: 13  GSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMWRFYTDDSPGIKV 72

Query: 262 XXXXXXXMSLLFIASVFMLHIWGKYTRA 345
                  MSLLFIASVFMLHIWGKY R+
Sbjct: 73  GPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>AE013599-1924|AAF58229.1|  100|Drosophila melanogaster CG10130-PA
           protein.
          Length = 100

 Score = 72.5 bits (170), Expect = 4e-13
 Identities = 41/88 (46%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
 Frame = +1

Query: 91  GSRSPTKASAGPRTASGXXXXXXXXXXXXXXXXXXXXXXG---SGGMWRFYTDDSXXXXX 261
           GSRSP+K SA     SG                      G   +GGMWRFYTDDS     
Sbjct: 13  GSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMWRFYTDDSPGIKV 72

Query: 262 XXXXXXXMSLLFIASVFMLHIWGKYTRA 345
                  MSLLFIASVFMLHIWGKY R+
Sbjct: 73  GPVPVLVMSLLFIASVFMLHIWGKYNRS 100


>BT003500-1|AAO39504.1| 1169|Drosophila melanogaster RE45036p
           protein.
          Length = 1169

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 160 FVDGLYYHWLFVGQQKLLWVIYSQDPTEV 74
           F+D +  HWLF G    L V +++D T++
Sbjct: 622 FIDAVKEHWLFPGNPFSLDVRFNEDETQI 650


>AE013599-158|AAF57274.2| 1169|Drosophila melanogaster CG11212-PA
           protein.
          Length = 1169

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 160 FVDGLYYHWLFVGQQKLLWVIYSQDPTEV 74
           F+D +  HWLF G    L V +++D T++
Sbjct: 622 FIDAVKEHWLFPGNPFSLDVRFNEDETQI 650


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,072,439
Number of Sequences: 53049
Number of extensions: 384115
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)