Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E07
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 302 3e-83
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 130 2e-31
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 123 3e-29
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 113 2e-26
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 106 3e-24
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 103 2e-23
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 103 2e-23
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 102 5e-23
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 99 4e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 89 7e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 88 1e-18
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 86 5e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 81 2e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 80 3e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 79 6e-16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 79 6e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 3e-15
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 72 9e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 66 4e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 64 3e-11
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 2e-06
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.4
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 9.8
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 302 bits (742), Expect = 3e-83
Identities = 144/221 (65%), Positives = 169/221 (76%), Gaps = 2/221 (0%)
Frame = +1
Query: 160 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 339
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 340 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 519
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 520 SVFFGGMPIQKDEEVL--KTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 693
+VF+GG+ I++D E K+ PHIVV TPGR+ A F+LDECDK+LE
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211
Query: 694 SLXMRRDVQEIFRNTPHGKQVMMFSATLSKEIXPVCKKFMQ 816
S+ MRRD+QE+FR TP KQVMMFSATLS EI P+CKKFMQ
Sbjct: 212 SVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQ 252
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 130 bits (314), Expect = 2e-31
Identities = 70/184 (38%), Positives = 108/184 (58%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 403 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 582
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 583 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHGKQVMM 762
HIVVGTPGR+L F++DE DK+L S ++++ P +Q+ +
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLL-SPEFTPIIEQLLSYFPKNRQISL 222
Query: 763 FSAT 774
+SAT
Sbjct: 223 YSAT 226
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 123 bits (297), Expect = 3e-29
Identities = 74/198 (37%), Positives = 105/198 (53%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 403 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 582
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 583 HIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHGKQVMM 762
H+VVGTPGR+ F+LDE D+ML S + + +IF+ P QV++
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEML-SRGFKDQIYDIFQLLPPTAQVVL 197
Query: 763 FSATLSKEIXPVCKKFMQ 816
SAT+ +++ V KFM+
Sbjct: 198 LSATMPQDVLEVTTKFMR 215
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 113 bits (273), Expect = 2e-26
Identities = 68/198 (34%), Positives = 99/198 (50%)
Frame = +1
Query: 217 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 396
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 397 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 576
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 577 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHGKQV 756
H+V GTPGR+ ILDE D++L + + +I+R P G QV
Sbjct: 140 -QHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQ-GFKEQIYDIYRYLPPGTQV 197
Query: 757 MMFSATLSKEIXPVCKKF 810
++ SATL +++ + KF
Sbjct: 198 VVVSATLPQDVLEMTNKF 215
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 106 bits (255), Expect = 3e-24
Identities = 66/204 (32%), Positives = 110/204 (53%), Gaps = 4/204 (1%)
Frame = +1
Query: 190 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 369
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 370 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 540
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 541 PIQKDEEVLKTACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLXMRRDV 717
++ E+ L+ P IV+ TPGR + ++DE D+MLE ++
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED-GFADEL 426
Query: 718 QEIFRNTPHGKQVMMFSATLSKEI 789
EI + P +Q M+FSAT++ ++
Sbjct: 427 NEIIQACPKSRQTMLFSATMTDKV 450
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 103 bits (248), Expect = 2e-23
Identities = 64/200 (32%), Positives = 99/200 (49%), Gaps = 6/200 (3%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 399
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 400 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 564
Q++ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 565 LKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPH 744
L P IV+ TP R + ++DE D ML S D++ + R+ P
Sbjct: 136 LLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML-SFGYNEDMKTLSRSLPR 194
Query: 745 GKQVMMFSATLSKEIXPVCK 804
G Q + SATLSK I + K
Sbjct: 195 GTQSFLMSATLSKNIASLQK 214
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 103 bits (248), Expect = 2e-23
Identities = 59/190 (31%), Positives = 106/190 (55%), Gaps = 1/190 (0%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 403 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 582
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 583 HIVVGTPGRILAXXXXXXXXXXXXXXF-ILDECDKMLESLXMRRDVQEIFRNTPHGKQVM 759
H++V TPGR++ + I+DE D++L+ + + +I + PH ++ +
Sbjct: 166 HVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLD-MDFGPIIDKILKIIPHERRTL 224
Query: 760 MFSATLSKEI 789
+FSAT++ ++
Sbjct: 225 LFSATMTSKV 234
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 102 bits (245), Expect = 5e-23
Identities = 65/214 (30%), Positives = 107/214 (50%), Gaps = 2/214 (0%)
Frame = +1
Query: 181 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 360
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 361 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 534
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 535 GMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRD 714
G+ +++ +L + P IVV TPGR L + DE D++ E +
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFE-MGFAAQ 233
Query: 715 VQEIFRNTPHGKQVMMFSATLSKEIXPVCKKFMQ 816
+ EI P +Q ++FSATL + + K +Q
Sbjct: 234 LTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQ 267
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 99 bits (238), Expect = 4e-22
Identities = 67/207 (32%), Positives = 101/207 (48%), Gaps = 7/207 (3%)
Frame = +1
Query: 217 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 396
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 397 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 570
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 571 TACPHIVVGTPGRI--LAXXXXXXXXXXXXXXFILDECDKMLESLXMRR--DVQEIFRNT 738
PH+VV TPGR+ + +LDE D++L+ + EI N
Sbjct: 241 KH-PHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNP 299
Query: 739 PH-GKQVMMFSATLSKEIXPVCKKFMQ 816
H +Q +FSAT + + KK M+
Sbjct: 300 MHTQRQTFIFSATFDEGLQQRLKKNMK 326
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 89.0 bits (211), Expect = 7e-19
Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 2/198 (1%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 396
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 397 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 576
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 577 CPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHGKQV 756
IV+GTPG ++ F+LDE D ML+ + I P Q+
Sbjct: 230 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 757 MMFSATLSKEIXPVCKKF 810
++FSAT S+ + ++F
Sbjct: 290 VLFSATFSERVEKYAERF 307
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 88.2 bits (209), Expect = 1e-18
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 8/201 (3%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 417
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 418 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 582
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 583 HIVVGTPGR---ILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHGKQ 753
IVV TPGR +L+ +LDE D+M + L V I N +Q
Sbjct: 543 EIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFD-LGFEPQVMRIINNIRPDRQ 601
Query: 754 VMMFSATLSKEIXPVCKKFMQ 816
++FSAT + + + +K ++
Sbjct: 602 TVLFSATFPRAMEALARKVLK 622
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 86.2 bits (204), Expect = 5e-18
Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Frame = +1
Query: 163 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 336
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 337 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 498
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 499 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDEC 678
S +R + +GG+P L I + TPGR+L +LDE
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLLDMLDSNKTNLRRVTYLVLDEA 278
Query: 679 DKMLESLXMRRDVQEIFRNTPHGKQVMMFSATLSKEIXPVCKKFM 813
D+ML+ + +++I +Q +MFSAT KE+ + + ++
Sbjct: 279 DRMLD-MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYL 322
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 81.0 bits (191), Expect = 2e-16
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 10/190 (5%)
Frame = +1
Query: 277 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 447
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 448 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTPGRILAX 621
TRELA Q YE + + G + V +GG P + K A +++GTPGR+L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLLDL 299
Query: 622 XXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPH-----GKQVMMFSATLSKE 786
+LDE D+ML++ +D++ I +TP +Q + FSAT +
Sbjct: 300 INDGSIDCSQVGYLVLDEADRMLDT-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPES 358
Query: 787 IXPVCKKFMQ 816
+ + F++
Sbjct: 359 VRALAATFLK 368
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 80.2 bits (189), Expect = 3e-16
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 6/200 (3%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 403 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 570
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 571 TACPHIVVGTPGRIL-AXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTP-H 744
+++V TPGR+L ++DE D++LE + ++++I + P
Sbjct: 210 KGV-NLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE-IGFEDEMRQIMKILPSE 267
Query: 745 GKQVMMFSATLSKEIXPVCK 804
+Q ++FSAT + ++ + +
Sbjct: 268 NRQTLLFSATQTTKVEDLAR 287
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 79.4 bits (187), Expect = 6e-16
Identities = 51/195 (26%), Positives = 97/195 (49%), Gaps = 6/195 (3%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 403 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 582
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 583 HIVVGTPGR----ILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTP--H 744
H+VV TPGR I + ++DE D++L S D+ + F P
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL-SPTFADDLDDCFSVLPASE 185
Query: 745 GKQVMMFSATLSKEI 789
+Q ++F+AT++ I
Sbjct: 186 DRQTLLFTATVTDAI 200
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 79.4 bits (187), Expect = 6e-16
Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 5/203 (2%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 403 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 570
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 571 TACPHIVVGTPGRILA-XXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHG 747
+I+V TPGR+L ILDE D++L+ + R + I + P
Sbjct: 160 RM--NILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILD-MGFRTTLDAIVSSLPVH 216
Query: 748 KQVMMFSATLSKEIXPVCKKFMQ 816
+Q M+FSAT +K + + + +Q
Sbjct: 217 RQTMLFSATQTKSVKDLARLSLQ 239
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.0 bits (181), Expect = 3e-15
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 8/176 (4%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 399
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 400 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 573
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 574 ACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTP 741
HIVV TPGR+L ++DE D+ML+ + DV +I + P
Sbjct: 375 GA-HIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLD-MGFEDDVNKILSSLP 428
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 72.1 bits (169), Expect = 9e-14
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Frame = +1
Query: 238 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL---- 405
L +L+ I G+ P+ VQ IP G D++ A++G GKTA F+ L
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 406 --------------EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP 543
P +++ L++ TREL QI +E +F Y S VR +GG
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCAVYGGAD 294
Query: 544 IQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE---SLXMRRD 714
I+ + C ++ TPGR++ +LDE D+ML+ +R
Sbjct: 295 IRAQIRQIDQGCD-LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHI 353
Query: 715 VQEIFRNTPHGKQVMMFSATLSKEIXPVCKKFMQ 816
V+ + +Q +MFSAT ++I + + F++
Sbjct: 354 VEGADMTSVEERQTLMFSATFPRDIQLLARDFLK 387
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 66.5 bits (155), Expect = 4e-12
Identities = 49/183 (26%), Positives = 90/183 (49%), Gaps = 8/183 (4%)
Frame = +1
Query: 274 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 435
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 436 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 615
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 616 -AXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIFRNTPHGK-QVMMFSATLSKEI 789
FILDE D++++ + + I K + + FSAT+ ++
Sbjct: 176 DHLQNPRILESLSTDSFILDEADRLMD-MGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
Query: 790 XPV 798
V
Sbjct: 235 SNV 237
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 63.7 bits (148), Expect = 3e-11
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 11/205 (5%)
Frame = +1
Query: 223 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 402
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 403 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 549
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 550 KDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLESLXMRRDVQEIF 729
D + P +V+GTPGR+ ILDE D +++ + +R +Q I
Sbjct: 123 NDLASFREKNPSVVIGTPGRL--NEMLSHISSKHLEILILDEADTLID-MGFQRTLQSII 179
Query: 730 RNTPHGKQVMMFSATLSKEIXPVCK 804
P ++ +FSAT++ + K
Sbjct: 180 SQLPKQRRTGLFSATMNDTVSSFLK 204
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 47.6 bits (108), Expect = 2e-06
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 1/171 (0%)
Frame = +1
Query: 295 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 471
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 472 SKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXX 651
++ E+ S S + + IQ+ L+ + +GTP R L
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY-DMCIGTPMR-LVQAIQTGLSFEK 189
Query: 652 XXXFILDECDKMLESLXMRRDVQEIFRNTPHGKQVMMFSATLSKEIXPVCK 804
F++DE D++ E + + + T +FSAT+ + + K
Sbjct: 190 VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAK 240
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 340 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 471
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 354 LGLTKYVHTEDGLRNAFVLNFGRMLKTAINNSAE 253
LGL +HT D + L+ G +L+ A N AE
Sbjct: 147 LGLMNQIHTFDEISGVITLDSGVILENADNFLAE 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,619
Number of Sequences: 5004
Number of extensions: 68080
Number of successful extensions: 205
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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