Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E06
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31183| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   8e-23
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)                 34   0.18 
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)                 29   5.0  

>SB_31183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score =  104 bits (250), Expect = 8e-23
 Identities = 45/59 (76%), Positives = 48/59 (81%)
 Frame = +3

Query: 225 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKYIPGTKMV 401
           GGKHK GPNLHG FGRKTGQA GFSY+ AN+ KGITW +DTL  YLENPKKYIPG   V
Sbjct: 49  GGKHKTGPNLHGLFGRKTGQAEGFSYTTANQNKGITWGEDTLMVYLENPKKYIPGRSNV 107


>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
          Length = 637

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
 Frame = +1

Query: 211 TLLKLVAN-TK*DRIYMDSLAEKLARLQDSHTP----MPIKLRAL--HGMTTLSLNILRI 369
           T+LK + N T  D  Y+DS+++K A L   H P    + +  R L   G TTL   + ++
Sbjct: 329 TMLKKLTNLTNLDMGYLDSVSDKTATLITKHLPNLQSLALSSRQLTDRGTTTLCCKLKKL 388

Query: 370 PRNTSLEPRWCLLDSRRQMSVLT-LLPISNLLPSNFKVIEN-SIRSIFHNISGI 525
              T+L+ R C + +   + ++  L  + +L+ S+   + N  I+ I +N+  +
Sbjct: 389 ---TTLDLRSCNITNNGMLGIVQGLCHLKSLILSSHPELTNVGIKHITNNLKSL 439


>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
          Length = 2084

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +1

Query: 295  SHTPMPIKLRALHGMTTLSLNILRIPRNTSLEPRWCLLD 411
            SH P P K+RA       SL++LR   N SL   W L D
Sbjct: 1674 SHQPTPSKIRAGCPCAPGSLHVLRPVNNDSLLVGWTLPD 1712


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,803,895
Number of Sequences: 59808
Number of extensions: 566535
Number of successful extensions: 1284
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)