Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E05
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 227 9e-60
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 227 1e-59
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 202 4e-52
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 31 0.94
02_05_0329 - 27986261-27987372,27988632-27988638,27988999-279891... 30 2.9
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 3.8
09_01_0051 - 862286-864670 29 6.6
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 28 8.7
07_01_1212 + 11560247-11560684,11560773-11560826,11560926-115609... 28 8.7
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 227 bits (555), Expect = 9e-60
Identities = 108/192 (56%), Positives = 138/192 (71%)
Frame = +2
Query: 152 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 331
+P++V+VTGAAGQI Y+++ IA G + G QPV LHLLD+ L GV MEL D AL
Sbjct: 40 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 99
Query: 332 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 511
PLL GV+ T++ EAFK V A ++G PR++GMERKDL++ NV I+K Q AL + A
Sbjct: 100 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAP 159
Query: 512 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 691
+ KVLVV NPANTNAL+ ++AP+IP +N T +TRLD NRA Q+A K+ V V DVK I
Sbjct: 160 NCKVLVVANPANTNALVLKEFAPAIPAKNITCLTRLDHNRALGQVAEKLNVHVGDVKNAI 219
Query: 692 IWGNHSSTQFPE 727
IWGNHSSTQFP+
Sbjct: 220 IWGNHSSTQFPD 231
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 726 NASNAVXIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVI 851
+AS+A ++ V E+I D+ +L+ FVT VQ+RGAAVI
Sbjct: 231 DASHATVSTDRGERPVRELIADEIWLREEFVTDVQQRGAAVI 272
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 227 bits (554), Expect = 1e-59
Identities = 109/192 (56%), Positives = 136/192 (70%)
Frame = +2
Query: 152 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 331
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L G+ MEL D A
Sbjct: 4 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAF 63
Query: 332 PLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 511
PLL G++ T + EA V A +VG PRKEGMERKD+++ NV I+K Q AL+ A
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAP 123
Query: 512 DVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVI 691
+ KVLVV NPANTNALI ++APSIP++N T +TRLD NRA Q++ K+ V V DVK I
Sbjct: 124 NCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAI 183
Query: 692 IWGNHSSTQFPE 727
IWGNHSSTQ+P+
Sbjct: 184 IWGNHSSTQYPD 195
Score = 37.5 bits (83), Expect = 0.014
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 726 NASNAVXIVGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVI 851
+ ++A +K V E++ DD +L F++TVQ+RGAA+I
Sbjct: 195 DVNHATVKTPSGEKPVRELVADDEWLNTEFISTVQQRGAAII 236
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 202 bits (492), Expect = 4e-52
Identities = 103/190 (54%), Positives = 128/190 (67%)
Frame = +2
Query: 158 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 337
+ V V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 74 VNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133
Query: 338 LAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDV 517
L V +P F+D A L+GA PR GMER LL N +IF EQG+AL+ A ++V
Sbjct: 134 LREVSIGIDPYVVFEDAEWALLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNV 193
Query: 518 KVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIW 697
KV+VVGNP NTNALIC K AP+IP +NF A+TRLD+NRA+ QLA K GV V + IW
Sbjct: 194 KVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNMTIW 253
Query: 698 GNHSSTQFPE 727
GNHS+TQ P+
Sbjct: 254 GNHSTTQVPD 263
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 765 KSVSEIINDDAYLKGAFVTTVQKRGAAVI 851
+ V E+I D +L+ F TVQKRG +I
Sbjct: 272 RPVKEVIKDTKWLEDEFTKTVQKRGGVLI 300
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 31.5 bits (68), Expect = 0.94
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Frame = -1
Query: 528 TRTFTSLRAALSKAWPCSLKMRTLAARRSFLSIP---SFLGIAPTRKAAATSLKASSGFA 358
TR +++AA A + R L + S +S+P S IA RK++++ SSG
Sbjct: 65 TRELEAIKAAPPHATAAATTPRRLRRQSSPVSVPCGASPRKIAALRKSSSSLSTTSSGGG 124
Query: 357 VGR-TPAKSGRAQSA--------NSMTTPSSTPIIGA 274
GR T S SA +S TTP+S+P++ A
Sbjct: 125 SGRRTDRVSAEESSACKTAACRRSSSTTPASSPMLAA 161
>02_05_0329 -
27986261-27987372,27988632-27988638,27988999-27989128,
27989157-27989216,27989318-27989970,27990056-27990526
Length = 810
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = -1
Query: 486 WPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGR 349
+P L TLAAR +F++ PS + +A K+ +T LKA + V R
Sbjct: 514 YPAHLMPATLAARDTFVARPSDVILATMPKSGSTWLKALAFCVVHR 559
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 134 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLE 298
G ++ E +R+ + Q Q+A GA FGP+ P L +DIA + + +
Sbjct: 187 GEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYD 241
>09_01_0051 - 862286-864670
Length = 794
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -1
Query: 468 MRTLAARRSFLSIPSFLGIAPTRKAAATSLKA 373
MR AA RSFL +PS I T A++ SL A
Sbjct: 1 MRCAAAARSFLPLPSTTRIHTTATASSPSLAA 32
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -1
Query: 414 IAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTP---SSTPIIGA--ISRRWRKT 250
+A AAAT + +G +V TP G + + TTP S P+I + + R
Sbjct: 225 LAAAAAAAATCSSSPAGSSVPITPTAVGHSGGGQTQTTPCAFSEAPVITSDDVEANLRLL 284
Query: 249 GC 244
GC
Sbjct: 285 GC 286
>07_01_1212 +
11560247-11560684,11560773-11560826,11560926-11560985,
11561084-11561227
Length = 231
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -1
Query: 435 SIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKSGRAQSANSMTTPSSTPIIGAIS 268
S P+F G T A T + A TP+ G +A + TPSSTP GA S
Sbjct: 25 STPAF-GTPSTNPAFGTPSSTPAFGAPSSTPS-FGTPSTAPAFGTPSSTPAFGAPS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,534,121
Number of Sequences: 37544
Number of extensions: 471515
Number of successful extensions: 1453
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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