Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E05
(894 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42) 229 2e-60
SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11) 166 2e-41
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079) 31 0.95
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08) 31 1.3
SB_40783| Best HMM Match : MH2 (HMM E-Value=0) 30 2.9
SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0) 29 5.1
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 28 8.9
SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0) 28 8.9
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06) 28 8.9
SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07) 28 8.9
>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
Length = 411
Score = 229 bits (560), Expect = 2e-60
Identities = 107/171 (62%), Positives = 133/171 (77%)
Frame = +2
Query: 215 IASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPLLAGVLPTANPEEAFKDVAA 394
I SG + P+ LHLLDI PMMG L GVV+EL DCA+PLL V+ T + E+AF D+
Sbjct: 102 IPSGVNVHIELPIILHLLDITPMMGALGGVVLELQDCAIPLLHEVVATDDAEKAFTDIDV 161
Query: 395 AFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDVKVLVVGNPANTNALICSKY 574
A LVGAMPR+EGMERKDLL+AN +IF+ QG+ALDK A+K K+LVVGNPANTN LI ++
Sbjct: 162 AILVGAMPRREGMERKDLLSANAKIFEAQGKALDKVAKKTCKILVVGNPANTNCLIAQRW 221
Query: 575 APSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVKRVIIWGNHSSTQFPE 727
APSIPKENF+ +TRLDQNR SQ+A ++ + V VK VIIWGNHS+TQ+P+
Sbjct: 222 APSIPKENFSCLTRLDQNRGGSQIAGRLNLRVDQVKNVIIWGNHSATQYPD 272
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 750 VGGAQKSVSEIINDDAYLKGAFVTTVQKRGAAVI 851
V G ++ + + DD YL G F++TVQKRGAA+I
Sbjct: 280 VNGNWVAIRDAVKDDDYLNGEFISTVQKRGAAII 313
>SB_38683| Best HMM Match : Ldh_1_N (HMM E-Value=1.7e-11)
Length = 462
Score = 166 bits (403), Expect = 2e-41
Identities = 76/195 (38%), Positives = 121/195 (62%)
Frame = +2
Query: 143 KMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELAD 322
K P+RV V+ A+G +AY +L + G VFG Q+ V ++LLD L+GV E+ D
Sbjct: 127 KKINPLRVCVSKASGPLAYGMLASLVQGEVFGFQEEVSIYLLDTPENQEALQGVAYEIED 186
Query: 323 CALPLLAGVLPTANPEEAFKDVAAAFLVGAMPRKEGMERKDLLAANVRIFKEQGQALDKA 502
CA PL GV T++P AFKD + L+ EG ++K+ L ++ ++F++ G+AL+
Sbjct: 187 CAWPLFRGVHITSDPAVAFKDASVVVLLDGKAINEGTDKKEYLLSHAKLFRDYGKALEAH 246
Query: 503 ARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAKIGVPVKDVK 682
A+ D KVL G PAN + I SK+APSI K+NF +++R+++NRA+ +A ++ V +K
Sbjct: 247 AKPDCKVLTAGGPANFSTFIASKFAPSIQKKNFVSLSRIEENRAKGLIAKRLNVNTAGIK 306
Query: 683 RVIIWGNHSSTQFPE 727
+I+WGN +P+
Sbjct: 307 DLIVWGNPGFNHYPD 321
>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.3 bits (75), Expect = 0.13
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -3
Query: 340 QKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRS 236
+ W T G +H+ FKY H RR ++ +E++ L R+
Sbjct: 332 RSWLPTWGAIHEELFKYHHKRRFLRDLEDELLPRT 366
>SB_44832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 32.7 bits (71), Expect = 0.41
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 334 WQSTVGQLHDNTFKYTHHRRNIKKVEEDRL 245
W T G +H+ FKY H RR ++ +E++ L
Sbjct: 235 WLPTWGAIHEELFKYHHKRRFLRDLEDELL 264
>SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)
Length = 472
Score = 31.5 bits (68), Expect = 0.95
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 340 QKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRL 245
+ W T +HD+ F++ H RR IK +E++ L
Sbjct: 152 RSWLPTWSAVHDDLFRHHHKRRFIKSLEDELL 183
>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
Length = 961
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -3
Query: 352 KNPSQKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRL--LRSKNCSRRNLIK 206
+N +KW+S++ Q D +Y RRN + E++L LR ++ N++K
Sbjct: 227 ENNRKKWESSMQQRRDKEVEYMEARRNRVEDYENQLQTLRIQDAEEYNMVK 277
>SB_40783| Best HMM Match : MH2 (HMM E-Value=0)
Length = 494
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Frame = +2
Query: 476 EQGQALDKAARKDVKVLVVGNPANTNALICSKYAPSIPKENFTAMTRLDQNRAQSQLAAK 655
+QG +K A K ++ LV AL + A S P + +T + Q++ +
Sbjct: 22 KQGDEEEKWAEKAIESLVKKLKKKKGALEDLEKALSNPNQQSKCVTIARSLDGRLQVSHR 81
Query: 656 IGVPVKDVKRVIIWGNHSSTQFPECFECCXYCW--RRSKICF*NY 784
G+P RV W + S + ECC Y + ++ ++C Y
Sbjct: 82 KGLPHVIYCRVWRWPDLQSHHELKPLECCEYAFGLKQKEVCINPY 126
>SB_28327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 538 VANNKDLHIFTSRFVQSLALLFEDAHISSKKIL 440
+ N KDLHI+TS ++ L + E A K IL
Sbjct: 131 LVNEKDLHIWTSTLLRVLRVKIEQAEQQKKGIL 163
>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
Length = 667
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 542 LGCQQQGPSH---LYEPLCPKPG 483
LGC QGP H L+E CP PG
Sbjct: 482 LGCPWQGPHHELALHEGACPHPG 504
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 28.3 bits (60), Expect = 8.9
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Frame = -1
Query: 504 AALSKAWP--CSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTP---- 343
+ LSKA P CS M + S S+P+ A A+A+S SS ++ +
Sbjct: 312 SGLSKAGPSNCSCDMNASPSALSASSLPASASSAIASSASASSASMSSASSLSASASSNI 371
Query: 342 AKSGRAQSANSMTTPSST 289
A S A SAN+ + +S+
Sbjct: 372 ASSDIASSANASSAKTSS 389
>SB_12464| Best HMM Match : Nsp1_C (HMM E-Value=0)
Length = 467
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 435 SIPSFLGIAPTRKAAATSLKASSGFAVGRT-PAKSGRAQSANSMTTPSSTPIIG 277
++ FL APT AT SGF G P +G + + + PS+TP G
Sbjct: 73 TLAPFLTAAPTG-LTATPAATGSGFQFGTAAPGAAGVSFKLGTASAPSTTPATG 125
>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
Length = 1977
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 501 ALSKAWPCSLKMRTLAARRSFLSIPSFLGIAPTRKAAATSLKASSGFAVGRTPAKS--GR 328
ALS P +L+ + + S+ P RK ATSL+ + G T KS G
Sbjct: 905 ALSGLAPTNLESHSTPTQPSYYRSWYSGSFFPNRKDNATSLQEGQLVSTGNTHTKSKVGS 964
Query: 327 AQSANSMTTPSSTPII 280
A++ + ++ S +P I
Sbjct: 965 AKAEKAPSSDSKSPYI 980
>SB_13186| Best HMM Match : Nsp1_C (HMM E-Value=6.8e-07)
Length = 329
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 435 SIPSFLGIAPTRKAAATSLKASSGFAVGRT-PAKSGRAQSANSMTTPSSTPIIG 277
++ FL APT AT SGF G P +G + + + PS+TP G
Sbjct: 73 TLAPFLTAAPTG-LTATPAATGSGFQFGTAAPGAAGVSFKLGTASAPSTTPATG 125
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,508,435
Number of Sequences: 59808
Number of extensions: 522925
Number of successful extensions: 1524
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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