Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E04
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    73   4e-14
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    27   4.5  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    26   7.9  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    26   7.9  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   7.9  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 61/219 (27%), Positives = 101/219 (46%), Gaps = 8/219 (3%)
 Frame = +3

Query: 213 FGINWPGNPNLNENFVDGEQNKSQNQELIKVTTTNKESYECQLPE--LRSTESTSIDDYD 386
           +   W  N ++ E  +D  + K++  +L  +    K  Y C  P   L    ST+   YD
Sbjct: 49  YSFEW-SNVSILEGDIDSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTTEPSYD 107

Query: 387 GPSPLHLLKPLMNKEMCSYRLES--YWSYEVCHGRYIRQYH-EEREG--KQINTQEYFLG 551
                      +N+    + +E+  YW+Y+  +G+++RQYH E ++G  K +    Y LG
Sbjct: 108 LQELRIQGTEKINELANVFLIENRGYWTYDYVYGQHVRQYHLEPQQGSDKVLANPMYILG 167

Query: 552 YWSPEKQAKLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHY 731
             +P  Q K     K  +E+  I     VEG A   ++    +GT+CD+  +PR   + Y
Sbjct: 168 -TAPNTQTK-----KNLEENWAI---GFVEGKAY--LQTTFRNGTMCDITKRPRHVILSY 216

Query: 732 VCYTHG-KHEVYSFXETSTCEYEIIILSPFLCEHPQFNL 845
            C T+    E+  + E S+C Y + I  P LC  P F +
Sbjct: 217 ECSTNSDTPEITQYQEVSSCAYSMTIHVPGLCSLPAFKI 255


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 483 RYIRQYHEEREGKQINTQEYFLGYWSP-EKQAKLE 584
           +Y+R++   REG   NT +     W+P +K   LE
Sbjct: 43  KYLREFDMTREGNVTNTPKAIPSSWNPNDKSDSLE 77


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 501 HEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVEG 644
           +EER+ K+   +  F  + +P+K  +L    +A ++ K +P +   +G
Sbjct: 336 YEERQAKRAARENAFTEHQTPQKPEQLHPSWEAKRKQK-MPSSAAFQG 382


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = +3

Query: 213 FGINWPGNPNLNENFVDGEQNK-SQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDG 389
           FG+ W      +ENF+D  + K S   + +K            +  LR  E T+   + G
Sbjct: 40  FGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQLEENIPVNSAMENLRKVEETAGSFWSG 99


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 111 VRNSKMRVKIVMLSL--VYSCIGIEHD-FKGFDDSILFGINWPGNPNLNENFVDGEQNKS 281
           ++   M  K   +S   VY  IG + +  K     +L  +N  G PN++E   + E   S
Sbjct: 268 IKELLMNAKFYFISALGVYQKIGWDDEGIKSHIQELLEILNGLGVPNMDEENEEAEWETS 327

Query: 282 QNQE 293
           +N+E
Sbjct: 328 ENEE 331


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 318 KESYECQLPELRSTESTSIDDYDGPSPLH 404
           KES+  +L  L+ TEST++  Y    PLH
Sbjct: 368 KESFSARLQSLQDTESTNL--YISNLPLH 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,443,924
Number of Sequences: 5004
Number of extensions: 72085
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)