Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E04
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0916 - 25932934-25933090,25933170-25933276,25933356-259334... 83 2e-16
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867... 33 0.22
10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539 30 2.7
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.7
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 29 3.6
08_02_0719 + 20388246-20390756,20391159-20391263 28 8.3
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946... 28 8.3
06_01_0772 + 5770502-5770619,5771035-5772335 28 8.3
03_03_0242 + 15765726-15765965,15766703-15766874,15767056-157672... 28 8.3
>06_03_0916 -
25932934-25933090,25933170-25933276,25933356-25933422,
25933509-25933624,25933873-25933944,25934055-25934255,
25934652-25934728,25935131-25935230
Length = 298
Score = 83.4 bits (197), Expect = 2e-16
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 13/207 (6%)
Frame = +3
Query: 258 VDGEQNKSQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDGPSPL----HLLKP--- 416
VD N QE + +T+ + Y C LP + SI + + + +KP
Sbjct: 53 VDAPFNPENGQESVPMTSHVGKHYTCFLPVEETKTMKSIIPQNATNVIIESERRVKPKDP 112
Query: 417 --LMN--KEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLG-YWSPEKQAKL 581
L+ K+ C YR E +WSYE C+ IRQ H EG+++ QEY LG Y + A
Sbjct: 113 DELLEILKDQCFYRHEGWWSYEFCYYGKIRQVHV--EGEKV-IQEYVLGEYDADATDAYY 169
Query: 582 EAEMK-AAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHYVCYTHGKHE 758
E + +A E + T+K V L +GT+CDL PR T V +VC +
Sbjct: 170 ENQTSDSADEDDNLIDTSKRYHVHL------YTNGTVCDLTDMPRETEVRFVC-SEPTVV 222
Query: 759 VYSFXETSTCEYEIIILSPFLCEHPQF 839
+ S E S+C+Y + + SP LC++P F
Sbjct: 223 ISSIKEISSCKYVLTVQSPMLCKNPLF 249
>02_05_0083 +
25684816-25685383,25685474-25685499,25686325-25686718,
25687726-25687814,25687924-25687980,25688341-25688408,
25688511-25688617,25688698-25688768,25688844-25688912
Length = 482
Score = 33.5 bits (73), Expect = 0.22
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +3
Query: 372 IDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVC---HGRYIRQYHEE-----REGKQI 527
++D + + +K +++KE+ ++ E Y +Y H ++QY+E+ REG Q
Sbjct: 311 LEDISSETNCYPVKVILSKELVAHNEEDYQNYRRAAKQHWDMMKQYYEKAVDAFREGNQ- 369
Query: 528 NTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVE 641
EY LG K + A + + S +I K+ KVE
Sbjct: 370 KEVEYLLG---EGKHYYMMARLADEKSSAEIVKSKKVE 404
>10_08_0601 + 19103745-19105162,19105253-19105717,19106314-19106539
Length = 702
Score = 29.9 bits (64), Expect = 2.7
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 462 SYEVCH-GRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKV 638
S+++ H R + +HE G+ NT E Y +P QA L ++ + E + +
Sbjct: 318 SFDMAHCSRCLIPWHEF--GEHFNTFELVSMYLAPSFQAILRSKYCSLIELDVL--NFLL 373
Query: 639 EGVALPNVEIVMDDGTICDLNGKPRLTRVHYVCYTHGKHEV 761
+G+ L V+ ++ G L+G P + HY + K ++
Sbjct: 374 DGIYLAEVDRILRPGGYWILSGPPINWKTHYKGWERTKEDL 414
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 2.7
Identities = 30/110 (27%), Positives = 44/110 (40%)
Frame = +3
Query: 321 ESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSYRLESYWSYEVCHGRYIRQY 500
ES E LPE E S+DD + L+ L + S + E E CH +
Sbjct: 296 ESKESDLPETEQAEEASVDDQEA---LNQQPALETNDSLSVKAE-----ETCHQSNVATC 347
Query: 501 HEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVEGVA 650
E+ T+E + + Q +E EMK A E+ +T + VA
Sbjct: 348 GEKTPEDDATTREPTVDTKEEQNQGSVE-EMKDA-EAVDTEETVQQSSVA 395
>10_08_0568 + 18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 321 ESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKEMCSY-RLESYWSYEVCHGRYIRQ 497
+ Y+ Q+ L S S I D P+P + ++NK++ Y +L + E + ++
Sbjct: 940 QCYQAQISTLASVSSLKILTEDDPTPPNCATNIVNKDLSVYLQLRGALNTEAEREKLRKK 999
Query: 498 YHE-EREGKQINTQEYFLGYWSPEKQAKLEAEMK 596
E +++ ++ + GY Q+K + +MK
Sbjct: 1000 RDEIQKQHDTLSQKMNASGYREKAPQSKQDEDMK 1033
>08_02_0719 + 20388246-20390756,20391159-20391263
Length = 871
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 240 NLNENFVDGEQNKSQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDG 389
+LNE+ ++ Q+ Q EL + N + ECQ+ R+ + +D +G
Sbjct: 778 SLNEDSINILQSLPQLAELSLIRALNVDRIECQIGGFRNLKILDLDQLNG 827
>06_02_0335 -
14591512-14591772,14594021-14594215,14594379-14594679,
14594930-14595051,14595287-14595466,14595514-14596337,
14596377-14596435,14596480-14597075
Length = 845
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +1
Query: 448 WKAIGAMKYAMEGISGSIMKKER 516
WKAIG ++A++GISG KK R
Sbjct: 684 WKAIGWQRFAVKGISG--FKKNR 704
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 159 YSCIGIEHDFKGFDDSILFGINWPGNPNLNENFVDG 266
Y C EHD+ G++ +I NW P L F G
Sbjct: 377 YICYLSEHDYSGWNGTITPFSNWSALPLLEIGFAGG 412
>03_03_0242 +
15765726-15765965,15766703-15766874,15767056-15767209,
15767287-15767350,15767533-15767640,15767817-15767942,
15768037-15768269,15768565-15768787
Length = 439
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 522 VCPLFLHDTAGYTFHGILHSSNSFPIYMNTFLCSSKALEGEEVMDHRNH 376
VC L + G + HG + ++ + FLCSS L+ +E M+ + H
Sbjct: 384 VCQLVMKPGEGISVHGSIPRNSRVDPWGGPFLCSSCQLK-KEAMEGKQH 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,921,305
Number of Sequences: 37544
Number of extensions: 417538
Number of successful extensions: 1095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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