Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E04
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)                89   3e-18
SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)              29   3.7  
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)           29   3.7  
SB_34392| Best HMM Match : Ank (HMM E-Value=5.2e-12)                   29   4.8  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)                   29   4.8  
SB_39166| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  28   8.5  

>SB_32231| Best HMM Match : PRKCSH (HMM E-Value=4.3e-12)
          Length = 917

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 39/102 (38%), Positives = 66/102 (64%), Gaps = 6/102 (5%)
 Frame = +3

Query: 417  LMNKEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMK 596
            ++  E    +LE+YW+YE+CHG+++RQ+H+ER  K +  QEY LG +SP ++++   +  
Sbjct: 772  ILPAEQIKQKLEAYWTYELCHGKHVRQFHDERSQKAVKMQEYILGKYSPPEKSQQSTDSS 831

Query: 597  AAQESKQI---PK---TTKVEGVALPNVEIVMDDGTICDLNG 704
            + + ++++   PK   T KVEG  +   E+VM +GT CDL G
Sbjct: 832  SKESTEEVHTKPKLIPTRKVEGRDMRYYEVVMGNGTPCDLKG 873


>SB_55669| Best HMM Match : Ribosomal_LX (HMM E-Value=3.6)
          Length = 479

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 576 KLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDL 698
           +L+  +K  + +  +P TTKV G+AL         GT+C+L
Sbjct: 70  RLDNNLKYLELATSLPNTTKVMGIALTGWSRYDYFGTLCEL 110


>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
          Length = 525

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 426 KEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQ 605
           +EM   RL+  W     HGRYIR    +        +  F+     EK+A+ E + +  +
Sbjct: 405 EEMEKRRLQEVWRIPPLHGRYIRHVFPKHHRFVAPIKLLFVPSLK-EKRAREEEKARVER 463

Query: 606 ESKQI 620
           E K++
Sbjct: 464 EKKRV 468


>SB_34392| Best HMM Match : Ank (HMM E-Value=5.2e-12)
          Length = 382

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 23/88 (26%), Positives = 34/88 (38%)
 Frame = +3

Query: 243 LNENFVDGEQNKSQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDGPSPLHLLKPLM 422
           L  N +D  Q     Q L+ +   N +  +C    L      +I D DG  PLH      
Sbjct: 280 LANNDIDVNQQTPSGQSLLHIAAGNAD-LKCTRLLLEYGADANIMDQDGWGPLHSAIRRG 338

Query: 423 NKEMCSYRLESYWSYEVCHGRYIRQYHE 506
           N +     +ES   +     R IR+Y +
Sbjct: 339 NWKCAILLIESGADFAEYSQRRIREYRD 366


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 234  NPNLNENFVDGEQNKSQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDGPSPLHLLK 413
            NP   ++ VDG+ N +  Q   + TT  +  +   + + +STE   I   D  +PL   +
Sbjct: 1402 NPETPDDRVDGKDNIASKQNSHRTTTRGRAGWGRPVAQAQSTEE-DIAGSDPETPLRRAR 1460

Query: 414  PLMNKE 431
               N++
Sbjct: 1461 ATRNQK 1466


>SB_31845| Best HMM Match : Arm (HMM E-Value=3.2e-13)
          Length = 771

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +3

Query: 522 QINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLN 701
           Q++TQ+  +   +P  +  L + +  AQE K +P++  +     PN + + +DG I D  
Sbjct: 204 QLDTQDPPVNKKAPANKETLSSNL--AQEEKNLPESNALNTKGTPNDKDLQEDG-IRDST 260

Query: 702 GK 707
           GK
Sbjct: 261 GK 262


>SB_39166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 504 EEREGKQINTQEYFLGYWSPEKQAKLEAEMK 596
           +E EG+    +E F   W+P+  A+L A+++
Sbjct: 274 DEEEGQDTQMRERFTSKWTPKPSAELTAQLR 304


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 168 IGIEHDFKGFDDSILFGINWPGNPNLNE-NFVDGEQNKSQNQELIKVTTTNKESYECQLP 344
           I  E DFK   D I  GI    +   +E + +D +++ ++      ++   ++SYECQ+ 
Sbjct: 48  ISDEGDFKTAYDFIKDGILLARSTTPSELDLIDEDEDDAREANKRSISPVRRKSYECQIS 107

Query: 345 ELRSTESTS 371
              S +  S
Sbjct: 108 GKNSPQKRS 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,006,913
Number of Sequences: 59808
Number of extensions: 512614
Number of successful extensions: 1283
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)