Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E04
(858 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical ... 134 6e-32
U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical pr... 57 2e-08
AF078788-3|AAC26966.1| 547|Caenorhabditis elegans Hypothetical ... 30 2.4
Z82280-9|CAB05263.3| 415|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z82275-2|CAC42314.2| 415|Caenorhabditis elegans Hypothetical pr... 29 4.2
AL021479-3|CAA16324.1| 279|Caenorhabditis elegans Hypothetical ... 29 4.2
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z74031-13|CAE54903.1| 383|Caenorhabditis elegans Hypothetical p... 29 5.6
Z74031-12|CAE54902.1| 460|Caenorhabditis elegans Hypothetical p... 29 5.6
Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical p... 29 5.6
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 9.8
>AL132876-2|CAB60843.3| 534|Caenorhabditis elegans Hypothetical
protein Y105E8A.2 protein.
Length = 534
Score = 134 bits (325), Expect = 6e-32
Identities = 64/194 (32%), Positives = 112/194 (57%), Gaps = 3/194 (1%)
Frame = +3
Query: 273 NKSQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDGPSPLHLLKPLMNKE-MCSYRL 449
N + + +++ + N E + C+LP++ +++ Y G + LL+ ++ K+ MCSY +
Sbjct: 55 NTELSDDYVRIMSKNNERFLCKLPQIDVEVKKNVE-YSGATAGKLLETMLYKDKMCSYLI 113
Query: 450 ESYWSYEVCHGRYIRQYHEERE-GKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPK 626
+ YW+Y+VCHGRY+ QYHE++ Q++ E++LG + A ++K P
Sbjct: 114 DVYWTYQVCHGRYVIQYHEDKMLTGQVSRTEFYLGNFDSALTASTNEQVK--------PA 165
Query: 627 TTKVEGVALPNVEIVMDDGTICDLNG-KPRLTRVHYVCYTHGKHEVYSFXETSTCEYEII 803
T ++E P + + GT CD+ G KPR T V Y+C +H++ S E S+C YEI+
Sbjct: 166 TRRIENEDYPYYSVSYNHGTSCDVTGGKPRTTDVVYICVEKVQHKILSVTEISSCHYEIV 225
Query: 804 ILSPFLCEHPQFNL 845
I++ LC+HP++ L
Sbjct: 226 IMTDLLCKHPEYQL 239
Score = 48.0 bits (109), Expect = 9e-06
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)
Frame = +3
Query: 402 HLLKPLMNKEMCSYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSP---EKQ 572
H + ++ E C +W YE C+G+++ Q+HE+ G++ + LG + ++
Sbjct: 341 HTVNRILTGEDCIVGGTGWWKYEFCYGKHVIQFHEDANGQR---SDILLGVFDEVVHKEW 397
Query: 573 AKLEAEMKAA-QESKQIPKTTKVEGVALPNVEIVMDDGTICDLNGKPRLTRVHYVCYTHG 749
KL+ + A Q + QI + +++ G ICD G + V C T
Sbjct: 398 VKLDRHARGAIQGNNQIDQISQIYA-----------KGDICDETGAHNV-EVRIRCAT-A 444
Query: 750 KHEVYSF----XETSTCEYEIIILSPFLCEHPQF 839
H SF E TC+Y + I S CE QF
Sbjct: 445 DHSALSFSMHLTEPRTCQYVLTIDSERFCEPLQF 478
>U23514-6|AAC46544.2| 816|Caenorhabditis elegans Hypothetical
protein F48E8.4 protein.
Length = 816
Score = 56.8 bits (131), Expect = 2e-08
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 7/207 (3%)
Frame = +3
Query: 240 NLNENFVDGEQNKSQNQELIKVTTTNKESYECQLPELRSTESTSIDDYDGPSPL-HLLKP 416
+L + V+ + S Q L+ VT+ + + C LP++ + P L
Sbjct: 58 DLEKRIVNRIPDDSTEQNLMFVTSKGGQKFACSLPDVEDVKKDKPKSSKNPKIYGDALAA 117
Query: 417 LMNKEMC-SYRLESYWSYEVCHGRYIRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEM 593
+ C R +WSY +C G+ I Q H E P ++ ++ +
Sbjct: 118 SFYVDKCVKLRGNHWWSYILCRGQTIEQVHGE-----------------PGQEGYVKNIL 160
Query: 594 KAAQESKQIPKTTKVEGVALPNVEIVMDDGTICDLNG--KPRLTRVHYVCYTH-GKHEVY 764
S ++P + L VE GT CDL +PR+T V Y C +EVY
Sbjct: 161 GLFDGSLKMPSYQESTDDRLLFVEETYTSGTFCDLEEYREPRMTSVRYECDAQLSTNEVY 220
Query: 765 --SFXETSTCEYEIIILSPFLCEHPQF 839
S E C+Y +I+ LC +P+F
Sbjct: 221 ISSVVEVKPCQYLMIVKVGTLCRYPEF 247
>AF078788-3|AAC26966.1| 547|Caenorhabditis elegans Hypothetical
protein ZC190.6 protein.
Length = 547
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -2
Query: 590 FSLQLSLLFRAPISQKVFLGVDLFALSFFMILPDIPSMAYFIAPIAFQSI*THF 429
FSL S++ S V +G D+F+ + M L DI S + I IA+Q +H+
Sbjct: 127 FSLLGSIIISIGFSYTVHMGQDMFSPTVAMTLVDISSCIFLI--IAWQKSLSHY 178
>Z82280-9|CAB05263.3| 415|Caenorhabditis elegans Hypothetical
protein R05A10.1 protein.
Length = 415
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 582 EAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDG 683
EA MK E ++P T V+GV LP ++D G
Sbjct: 138 EAAMKKHGEKNEVPGKTNVDGVDLPKGWSLVDGG 171
>Z82275-2|CAC42314.2| 415|Caenorhabditis elegans Hypothetical
protein R05A10.1 protein.
Length = 415
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 582 EAEMKAAQESKQIPKTTKVEGVALPNVEIVMDDG 683
EA MK E ++P T V+GV LP ++D G
Sbjct: 138 EAAMKKHGEKNEVPGKTNVDGVDLPKGWSLVDGG 171
>AL021479-3|CAA16324.1| 279|Caenorhabditis elegans Hypothetical
protein Y22F5A.5 protein.
Length = 279
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 222 NWPGNPNLNENFVDGEQNKSQNQELIKVTTTNK 320
NWP NP N NF++ +++Q L TN+
Sbjct: 148 NWPNNPTANVNFINSIISRAQQYGLSVGIYTNQ 180
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 489 IRQYHEEREGKQINTQEYFLGYWSPEKQAKLEAEMKAAQESKQIPK 626
+R+ EE + K++ +E + + E + KLEAEM+ E +I +
Sbjct: 463 VRKLKEEEKRKRVLEEEMEMKRKNEEAKIKLEAEMREKAEQAEIKR 508
>Z74031-13|CAE54903.1| 383|Caenorhabditis elegans Hypothetical
protein F32D8.12c protein.
Length = 383
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 657 NVEIVMDDGTICDLNGKPRLTR 722
N+E+V+ DGTI D GK R R
Sbjct: 84 NLEVVLADGTIIDTKGKGRCPR 105
>Z74031-12|CAE54902.1| 460|Caenorhabditis elegans Hypothetical
protein F32D8.12b protein.
Length = 460
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 657 NVEIVMDDGTICDLNGKPRLTR 722
N+E+V+ DGTI D GK R R
Sbjct: 161 NLEVVLADGTIIDTKGKGRCPR 182
>Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical
protein F32D8.12a protein.
Length = 474
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 657 NVEIVMDDGTICDLNGKPRLTR 722
N+E+V+ DGTI D GK R R
Sbjct: 175 NLEVVLADGTIIDTKGKGRCPR 196
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 303 VTTTNKESYECQLPELRSTESTSIDDYDGP 392
+ T N+ CQLP L S S+D++ GP
Sbjct: 472 IATANRRCV-CQLPSLLGFTSKSLDNFQGP 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,821,802
Number of Sequences: 27780
Number of extensions: 392885
Number of successful extensions: 1187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -