Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E03
(888 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 25 0.60
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 1.8
AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory recept... 24 1.8
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.4
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.4
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.4
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.4
AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 23 3.2
AM292339-1|CAL23151.2| 387|Tribolium castaneum gustatory recept... 22 7.4
AM292338-1|CAL23150.2| 372|Tribolium castaneum gustatory recept... 22 7.4
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 25.4 bits (53), Expect = 0.60
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 543 DGRFADVQFTKDWKLDANRRDLTINSMFLGFDGSVYDYF 659
DG D ++ K W++D N+ + S F F +++ F
Sbjct: 1938 DGLDLDWEYPKCWQVDCNKGPASDKSAFADFVKELHEAF 1976
Score = 21.4 bits (43), Expect = 9.8
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 543 DGRFADVQFTKDWKLDANRRDLTINSMFLGF 635
DG D ++ K W++D N+ + F F
Sbjct: 2436 DGLDLDWEYPKCWQVDCNKGPDSDKEAFAAF 2466
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 23.8 bits (49), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 516 TTLRIDMVT---DGRFADVQFTKDWKLDANRRDLTINS 620
+T +ID+ D + D++F W D N+ DL +NS
Sbjct: 126 STCKIDITWFPFDDQHCDMKFGS-WTYDGNQLDLVLNS 162
>AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory receptor
candidate 23 protein.
Length = 291
Score = 23.8 bits (49), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 135 RIVRLLRFFCMHLT*QKRNSKSKWLN-CCIS 46
R++R + +LT N K WLN CC++
Sbjct: 34 RMMRSWYYLLTNLTYNNTNRKYYWLNVCCLN 64
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 543 DGRFADVQFTKDWKLDANRRDLTINS 620
D + D++F W D N+ DL +NS
Sbjct: 138 DDQHCDMKFGS-WTYDGNQLDLVLNS 162
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 543 DGRFADVQFTKDWKLDANRRDLTINS 620
D + D++F W D N+ DL +NS
Sbjct: 138 DDQHCDMKFGS-WTYDGNQLDLVLNS 162
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 543 DGRFADVQFTKDWKLDANRRDLTINS 620
D + D++F W D N+ DL +NS
Sbjct: 138 DDQHCDMKFGS-WTYDGNQLDLVLNS 162
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.4 bits (48), Expect = 2.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 543 DGRFADVQFTKDWKLDANRRDLTINS 620
D + D++F W D N+ DL +NS
Sbjct: 138 DDQHCDMKFGS-WTYDGNQLDLVLNS 162
>AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription
factor protein.
Length = 441
Score = 23.0 bits (47), Expect = 3.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 222 NPIVIKVDSPEFKSIFTEEVIDLKKI 299
NPI I +SP F + + +E I K+
Sbjct: 107 NPIYIHPESPNFGAHWMKESISFAKV 132
>AM292339-1|CAL23151.2| 387|Tribolium castaneum gustatory receptor
candidate 18 protein.
Length = 387
Score = 21.8 bits (44), Expect = 7.4
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Frame = -3
Query: 373 FGVSPIKRSLTAPPAILI-------SCLYLSKIF 293
FG+SP+ + LT P ++ +C+YL+ ++
Sbjct: 17 FGLSPMTQKLTLSPLKVLQTVILGTTCIYLTSLY 50
>AM292338-1|CAL23150.2| 372|Tribolium castaneum gustatory receptor
candidate 17 protein.
Length = 372
Score = 21.8 bits (44), Expect = 7.4
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Frame = -3
Query: 373 FGVSPIKRSLTAPPAILI-------SCLYLSKIF 293
FG+SP+ + LT P ++ +C+YL+ ++
Sbjct: 17 FGLSPMTQKLTLSPLKVLQTVILGTTCIYLTSLY 50
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,442
Number of Sequences: 336
Number of extensions: 4345
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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