Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E03
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    50   6e-07
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             47   3e-06
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    30   0.38 
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      27   4.7  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.2  

>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 66/219 (30%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
 Frame = +3

Query: 291 KKI--FDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATP----EEMKEMFTAE-----E 437
           KKI   D+ + E+R AGG VRD L+ +   D+D A          +  + + A+     E
Sbjct: 26  KKIGQMDRKEPEVRFAGGWVRDKLLRIESHDIDVAIDCMSGFEFAQHLQSYLAQQHPDWE 85

Query: 438 VRMINVNGE----RH-GTITARINDKENFEVTTLRIDMVTDGRFADVQFTKDWKLDANRR 602
            ++I ++      +H  T TARI   +  ++  LR    T+   ++         DA RR
Sbjct: 86  TKVIKIDANPLKSKHLETATARIMGMD-IDIVNLRHHDYTNSNSSNKLVFGTPLEDALRR 144

Query: 603 DLTINSMFLGFDGSVYDYF--YGYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGRIA 776
           D TIN++F        + F   G  DL  + +      D    +D LR +R  RF    A
Sbjct: 145 DATINALFYNLKSKTVEDFTGKGLVDLSNKIIRTPLVADETFGDDPLRAVRCIRF----A 200

Query: 777 LKPD-NHEEETLXVLKN-NVHG--LGNISGERIWGELKK 881
            K D N  EET+  LKN  +H     +IS ERI  E+ K
Sbjct: 201 TKYDFNIHEETIKGLKNPELHERLRSSISRERIGVEVDK 239


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 19/207 (9%)
 Frame = +3

Query: 318 EIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINVNG-----ERHGTIT 482
           E+R+AGG VRD L+GL+  DLD                E V  ++ +      +  G +T
Sbjct: 36  EVRLAGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIFEYVHSLDSDSVIPYKDALGKLT 95

Query: 483 ARINDKENFEVTTLRI-DMVTD--GRFADVQFTKDW---------KLDANRRDLTINSMF 626
              +  ++ E  TL + D+  D  G  A+    K           + DA RRD T+N++F
Sbjct: 96  VNPDQSKHLETATLSLFDLDIDFVGLRAESYDDKSRIPSVTPGTVETDALRRDFTVNTLF 155

Query: 627 LGFDGSVYDYFY--GYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGRIALKPDNHEE 800
                   +     GY+DLQ + +     P     ED LRI+R  RF  R     D    
Sbjct: 156 FNIRTEKIEDITKRGYKDLQTKVLVTPISPLQSFLEDPLRILRGIRFASRFEFTIDPSVV 215

Query: 801 ETLXVLKNNVHGLGNISGERIWGELKK 881
             +   K        +S ER+  E++K
Sbjct: 216 SAIQDPKVCKAFEKKVSKERVGEEIEK 242


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = +3

Query: 24  KIFKDLREIYNNLATLIWNFFFVMLSACKRILGVGQF--FQLRGTCSVTDPSRRRFRSKM 197
           K F+D    Y  L  + W +FF+        L VG F  F + G  S+T     R   K 
Sbjct: 55  KNFQDNYRFYGTLLCICWLYFFIWYPFALLALMVGVFLSFVMHGLGSLTINQNIRLDPKY 114

Query: 198 DLNLKCRENPIVIKVDSP 251
            +   C    IVI   +P
Sbjct: 115 SIPGVCAVTLIVIMFLAP 132


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -3

Query: 505 FSLSLIRAVIVPCLSPLTFIILTSSAVNISFISSGVA-VVAKSRSFGVSPIK--RSLTAP 335
           F+ +L++A  + CL+     I + +  N +   S +  ++AK         K  ++ T  
Sbjct: 159 FNENLLKAWEIYCLAEAQTCIFSKANSNDTTSESIIVKILAKVFLLYEDAYKLFKNATGA 218

Query: 334 PAILISCLYLSKIFFRSITSSV 269
           P+I +   Y+ K+F+++IT  +
Sbjct: 219 PSIFVHWTYIQKLFYQTITYQI 240


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 214 HFKFKSIFDRNLLRLGSVTLHVPLSWKNCPTPKILLHALNITKKKFQIKV 65
           HF +K      ++R G   ++       CPT K  L AL I  KK ++ +
Sbjct: 164 HFFWKKDIGPQMIRKGLAVVYEGSDGVFCPTKKECLLALEIVAKKKKLSL 213


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 394 VVAKSRSFGVSPIKRSLTAPPAILISCLYLSKIFFRSITSSVNILLNSGESTLITIGFSR 215
           VV  S +F V+PI + L    ++ +SC  L  +F    T     +L + E  L    + +
Sbjct: 127 VVDVSPAFSVNPIDKKLAIGLSVGLSCCILIVLFLHFATRRERRILKN-EKELEMSSYRK 185

Query: 214 H 212
           H
Sbjct: 186 H 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,599
Number of Sequences: 5004
Number of extensions: 73160
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)