Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E03
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 68 9e-12
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 60 2e-09
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362... 46 4e-05
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 31 0.93
04_01_0519 + 6831912-6831978,6832333-6832488,6832748-6833098,683... 30 2.8
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 29 6.5
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 68.1 bits (159), Expect = 9e-12
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 6/193 (3%)
Frame = +3
Query: 315 HEIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARIN 494
+++ + GG VRDL+M TPKD D TTA ++K+ F+ V + H I
Sbjct: 108 YDVYLVGGCVRDLIMKKTPKDFDIITTADLRQVKDTFSGSAVIVGRRFPICHVYENNSIV 167
Query: 495 DKENFEV-----TTLRIDMVTDGRFADVQFTKDWKLDANRRDLTINS-MFLGFDGSVYDY 656
+ +F T+ +I + + + WK + RD TIN MF + +YDY
Sbjct: 168 EVSSFNTYARGSTSNQIYTSKSPHCSKNDYIR-WK-NCQGRDFTINGLMFNPYAEKIYDY 225
Query: 657 FYGYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGRIALKPDNHEEETLXVLKNNVHG 836
F G ED++K +V V +ED RI+R R R+ N +ET ++
Sbjct: 226 FGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLGF---NFPKETAYYVRTLACS 282
Query: 837 LGNISGERIWGEL 875
+ + RI E+
Sbjct: 283 VARLDKGRILMEI 295
>03_01_0224 -
1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 60.1 bits (139), Expect = 2e-09
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Frame = +3
Query: 327 IAGGAVRDLLMGLTPKDLDFATTATPEEMKEM------FTAEEVRMINVNGERHGTITAR 488
+ GG VRDLL+ PKD D TTA+ +++K+M + + VN +
Sbjct: 101 LVGGCVRDLLLKRAPKDFDVITTASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSS 160
Query: 489 INDKENFEVTTLRIDMVTDGRFADVQFTKDWKLDANRRDLTINSMFLG-FDGSVYDYFYG 665
+ N + I + + D W+ ++ +RD TINS+F F+ +YDY G
Sbjct: 161 FSTNANHVKGSKNIGCSEEFKRYDEGDILLWQ-NSMKRDFTINSLFFNPFNFKIYDYVNG 219
Query: 666 YEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGRI 773
D+ K +V+ V V KED R R++ RI
Sbjct: 220 VRDISKNKVSTVIPARVSFKEDPGRKFRFWFISARI 255
>12_01_0461 +
3618414-3618782,3619664-3619794,3620177-3620294,
3620602-3620654,3620758-3620807,3620912-3621010,
3621511-3621620,3621773-3621900,3622071-3622161,
3622610-3622693,3622863-3623083,3623449-3623527,
3624134-3624283,3624326-3624470,3624604-3624983,
3625096-3625197
Length = 769
Score = 46.0 bits (104), Expect = 4e-05
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Frame = +3
Query: 318 EIRIAGGAVRDLLMGLTPKDLDFATTATP--------EEMKEMFTAEE--VRMINVNGER 467
++R+AGG VRD L+G D+D A E E+ E+ + +I N ++
Sbjct: 112 QLRVAGGWVRDKLLGKDSTDIDIALDNMTGQNFCEKVNEYSELLGEEQKGIGVIQCNPDQ 171
Query: 468 HGTI-TARINDKENF-EVTTLRIDMVTDGRFADVQFTKDWKLDANRRDLTINSMFLGFDG 641
+ TAR+ + + + LR + + K DA RRDLTINS+F +
Sbjct: 172 SKHLETARMLIFDIWIDFVNLRSEKYAENSRIPTVEIGTAKEDAFRRDLTINSLFFNINT 231
Query: 642 SVYDYF--YGYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFYGR 770
+ + G EDL+K + +D LR++R RF R
Sbjct: 232 NTVEDLTGRGIEDLKKGLIVTPLPAKATFLDDPLRVLRAIRFAAR 276
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 31.5 bits (68), Expect = 0.93
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 325 LISCLYLSKIFFRSITSSVNILLNSGESTLITIGFSRHFKFKS 197
++SC L + F + + ++L +TL+ +GFS HF KS
Sbjct: 396 IVSCYSLFPLLFENQEYPIKVMLLLTYATLMWVGFSSHFAAKS 438
>04_01_0519 +
6831912-6831978,6832333-6832488,6832748-6833098,
6833481-6833662,6833756-6834004,6834182-6834406,
6837492-6837791,6838642-6839215,6839959-6840059
Length = 734
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 240 VDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGG 338
+ S F S + VI +K +FD+ K +++ GG
Sbjct: 15 LSSARFLSATQQRVIPMKSVFDRLKESLKVTGG 47
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 480 TARINDKENFEVTTLRIDMVTDGRFADVQFTKDWKL-DANRRDLT 611
T ++ DK++ V T+++ G + V T+D K+ DA+RRD T
Sbjct: 433 TTKVKDKKDRGVLTIKVSSCPHGGASWVLGTRDAKVFDADRRDNT 477
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,830,168
Number of Sequences: 37544
Number of extensions: 403575
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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