Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E03
(888 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41) 261 5e-70
SB_34059| Best HMM Match : PolyA_pol (HMM E-Value=0) 86 3e-17
SB_42819| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.033
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81) 32 0.71
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.94
SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21) 30 2.9
SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22) 30 2.9
SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08) 30 2.9
SB_27452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_25532| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22) 29 3.8
SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22) 29 5.0
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
>SB_54104| Best HMM Match : PolyA_pol (HMM E-Value=1.29998e-41)
Length = 466
Score = 261 bits (640), Expect = 5e-70
Identities = 130/233 (55%), Positives = 165/233 (70%)
Frame = +3
Query: 183 FRSKMDLNLKCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMG 362
+ SK ++ K R I D+ FK+I T E++ L +F K+ +E+RI GGAVRDLLMG
Sbjct: 41 YLSKFAVSSKRRMEGKTILADTEGFKAIHTPELLRLSSVFTKHGYELRIVGGAVRDLLMG 100
Query: 363 LTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTTLRIDMVT 542
PKD+D T ATPE+M +MF EE+R I G +HGT+TA IN K +FEVTTLRID+ T
Sbjct: 101 KLPKDIDLCTNATPEQMIKMFKDEEIRCIET-GLQHGTLTAHIN-KTDFEVTTLRIDVET 158
Query: 543 DGRFADVQFTKDWKLDANRRDLTINSMFLGFDGSVYDYFYGYEDLQKRRVAFVGDPDVRV 722
DGR A V+FT DW+LDA RRDLT N+M + G++YDYF G DL+K V FVGD +R+
Sbjct: 159 DGRHAKVKFTNDWQLDAERRDLTFNAMSVDLTGNLYDYFNGEIDLRKGHVRFVGDARLRI 218
Query: 723 KEDYLRIMRYFRFYGRIALKPDNHEEETLXVLKNNVHGLGNISGERIWGELKK 881
KEDYLRI+RYFRFYG+IA +PDNH+ +TL V+K GL IS ERIW E+ K
Sbjct: 219 KEDYLRILRYFRFYGKIATEPDNHDPDTLAVIKELAEGLRIISVERIWLEVSK 271
>SB_34059| Best HMM Match : PolyA_pol (HMM E-Value=0)
Length = 324
Score = 86.2 bits (204), Expect = 3e-17
Identities = 68/247 (27%), Positives = 113/247 (45%), Gaps = 12/247 (4%)
Frame = +3
Query: 177 RRFRSKMDLNLKCRENPIVIKVDS-PEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDL 353
+ FRS + P V+ P + + I + + + ++ + GG VRDL
Sbjct: 7 KSFRSPIRRGNHSHSTPEVLSSSQHPIERGEISRYAISVVERLQQAGYQAYLVGGCVRDL 66
Query: 354 LMGLTPKDLDFATTATPEEMKEMFTAEEV-----RMINVNGERH--GTITARINDKENFE 512
L+ + PKD D AT+ATPE+++ F V ++++V+ R T T R N E E
Sbjct: 67 LLDIEPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIETATFRANHPEGDE 126
Query: 513 VTTLRIDMVTD-GRFADVQFTKDWKLDANRRDLTINSMFLGFDGS---VYDYFYGYEDLQ 680
+ + GR + DA RRD TIN+++ +D S + DY G D++
Sbjct: 127 DENSNLSSRNESGRILRDNVYGSLEDDAQRRDFTINALY--YDPSTERILDYANGVHDIR 184
Query: 681 KRRVAFVGDPDVRVKEDYLRIMRYFRFYGRIALKPDNHEEETLXVLKNNVHGLGNISGER 860
+ +GDP R +ED +R++R RF ++ + H + L LG I R
Sbjct: 185 NHLIRLIGDPTQRYQEDPVRMLRAVRFAAKLDFDIEKHSAAPIYKL---APLLGGIPAAR 241
Query: 861 IWGELKK 881
++ E+ K
Sbjct: 242 LFDEVLK 248
>SB_42819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 36.3 bits (80), Expect = 0.033
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = +3
Query: 318 EIRIAGGAVRDLLMGLTPKDLDFATTATPEEMKEMFTAEEVRMINVNGERHGTITARIND 497
E R A + L+ DL T A MK+ AE VRM + G GT+ A + D
Sbjct: 129 EKRKAESELAQCLVQALAVDLPIQTEALLAAMKDGMQAESVRMYYMQGGEPGTLLAAMKD 188
Query: 498 KENFE---VTTLRIDMVTDGRFADVQFTKDWKLDANRRDLTI 614
+ ++ + LRI T R V F+ ++L +R+ I
Sbjct: 189 ETGYDFDVIEKLRIQPSTRIRNRSVFFSFRFRLRIRQRNRRI 230
>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
Length = 468
Score = 31.9 bits (69), Expect = 0.71
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Frame = -3
Query: 625 NIEFIVRSLLLASSFQSLVN*TSAKRPSVTISILKVVTSKFSLSLIRAVIVPCLSPLTFI 446
N+ ++++ + SS LV +S VT+ + +VTS F +S + +T +
Sbjct: 41 NVTWVIKFI---SSLTRLVTYSSNVTRDVTV--ISIVTSIFRISSSVISVFTLSFSVTLV 95
Query: 445 ILTSSAVNISFISSGVAVVAKSRSFGVS---PIKRSLTAPPAILISCLYLSKIFFRSITS 275
+ S+V + ISS V V K SF V+ I S+T+ I S ++ + F S+T
Sbjct: 96 VTVISSVIVVTISSSVTSVVKV-SFSVTLVVTISSSVTSVVTISSSVTWVVTVSF-SVTW 153
Query: 274 SVNILLN 254
V + N
Sbjct: 154 VVTVSFN 160
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 31.5 bits (68), Expect = 0.94
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = -3
Query: 493 LIRAVIVPCLSPLTFIILTSSAVNISFISSGVAVVAKSRSFGVSPIKR----SLTAP-PA 329
L RAV V CL I+ AV++S + V+V R VS + R S++ P A
Sbjct: 205 LCRAVSVSCLYRDVSILCLYRAVSVSCLYRAVSVSCPYRVVSVSCLYRVSVVSVSCPCRA 264
Query: 328 ILISCLYLSKIFFRSITSSVNILL 257
+ +SCLY + S + V ++L
Sbjct: 265 VSVSCLYRAVPRIVSFSCCVRVVL 288
>SB_48157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK+CPT +
Sbjct: 762 QWKTFVSNRVRKIAEITNETPITWKHCPTER 792
>SB_18524| Best HMM Match : Peptidase_A17 (HMM E-Value=8.3e-21)
Length = 620
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK+CPT +
Sbjct: 278 QWKTFVSNRVRKIAEITNETPITWKHCPTER 308
>SB_49811| Best HMM Match : rve (HMM E-Value=4.4e-22)
Length = 664
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK+CPT +
Sbjct: 128 QWKTFVSNRVRKIAEITNETPITWKHCPTER 158
>SB_29908| Best HMM Match : Calx-beta (HMM E-Value=2.3e-08)
Length = 549
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK+CPT +
Sbjct: 16 QWKTFVSNRVRKIAEITNETPITWKHCPTER 46
>SB_27452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK+CPT +
Sbjct: 16 QWKTFVSNRVRKIAEITNETPITWKHCPTER 46
>SB_25532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.9 bits (64), Expect = 2.9
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK+CPT +
Sbjct: 18 QWKTFVSNRVRKIAEITNETPITWKHCPTER 48
>SB_12637| Best HMM Match : rve (HMM E-Value=3.7e-22)
Length = 1072
Score = 29.5 bits (63), Expect = 3.8
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -3
Query: 208 KFKSIFDRNLLRLGSVTLHVPLSWKNCPTPK 116
++K+ + ++ +T P++WK CPT +
Sbjct: 611 QWKTFVSNRVRKIAEITNETPITWKQCPTER 641
>SB_7045| Best HMM Match : rve (HMM E-Value=3.8e-22)
Length = 1213
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 210 KCRENPIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIA 332
+C E PI+ V++P+FK + + L KI K K RIA
Sbjct: 61 ECFERPILDPVNAPKFKRMLKRDPFLLCKIRKKIKLRDRIA 101
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 28.7 bits (61), Expect = 6.6
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 273 EEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLT--PKDLDFATTATPEEMKEMFTAEEVRM 446
E V LK+ Y+HEIR +++ G T + L+ A T +KE E+VR
Sbjct: 399 ENVAQLKQQLQAYEHEIRNLKAELKNQKHGFTECKQSLESAITVLEGRIKE--REEQVR- 455
Query: 447 INVNGERHGTITARINDKENFE 512
N E H + + KE+FE
Sbjct: 456 -NELHEEHQYLMENLK-KEHFE 475
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,492,761
Number of Sequences: 59808
Number of extensions: 477994
Number of successful extensions: 1178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -