Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E03
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical pr...   277   8e-75
Z70208-12|CAA94137.2|  209|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z50874-1|CAA90763.1|  377|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    29   3.4  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    29   4.4  
AF016681-14|AAB66169.1| 1119|Caenorhabditis elegans Guanylyl cyc...    28   7.8  

>Z79757-4|CAB02125.2|  436|Caenorhabditis elegans Hypothetical
           protein F55B12.4 protein.
          Length = 436

 Score =  277 bits (679), Expect = 8e-75
 Identities = 124/219 (56%), Positives = 168/219 (76%)
 Frame = +3

Query: 225 PIVIKVDSPEFKSIFTEEVIDLKKIFDKYKHEIRIAGGAVRDLLMGLTPKDLDFATTATP 404
           P  +K+D+ +F+++FT +++ L+ +F K  +E+RIAGGAVRDLLM + P D+DFA+TATP
Sbjct: 6   PTTMKIDNEDFRTLFTPQLLKLRDLFAKRNYELRIAGGAVRDLLMNIRPADVDFASTATP 65

Query: 405 EEMKEMFTAEEVRMINVNGERHGTITARINDKENFEVTTLRIDMVTDGRFADVQFTKDWK 584
            +MKEMF  +++RM++  GE HGTIT RI+D ENFE+TTLR+D+V DGR A V++T DW+
Sbjct: 66  TQMKEMFEEDKIRMLHKRGEEHGTITCRIDDCENFEITTLRVDIVCDGRRAQVEYTTDWQ 125

Query: 585 LDANRRDLTINSMFLGFDGSVYDYFYGYEDLQKRRVAFVGDPDVRVKEDYLRIMRYFRFY 764
           LDANRRDLTINS+FL   G+V DYF G  D++ RR+AFVGD   R++EDYLRI+RYFRF+
Sbjct: 126 LDANRRDLTINSLFLDLHGNVVDYFGGIRDIETRRIAFVGDARQRIQEDYLRILRYFRFF 185

Query: 765 GRIALKPDNHEEETLXVLKNNVHGLGNISGERIWGELKK 881
           GRI+     HE +T+  +  N  G+  IS ERIW ELKK
Sbjct: 186 GRIS-DCTEHEHDTIQAIVENKDGMAGISAERIWTELKK 223


>Z70208-12|CAA94137.2|  209|Caenorhabditis elegans Hypothetical
           protein F54B11.4 protein.
          Length = 209

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 366 TPKDLDFATTATPEEMKEMFTAEEVRMINVNGE--RHGTITARINDKENFEVTTLRIDMV 539
           T   L+F  T   E  KE    E +   +  G   +H T  + +NDKENF+ +    D++
Sbjct: 106 TGNSLNFLKTEKVENEKERQHGE-ISTFSAGGSTLQHATYLSLVNDKENFQASGCGWDLI 164


>Z50874-1|CAA90763.1|  377|Caenorhabditis elegans Hypothetical
           protein R10E4.1 protein.
          Length = 377

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = +3

Query: 582 KLDANRRDLTINSMFLGFDGSVYDYFYGYEDLQKRRVAFVGDPDVRVKEDYLRIMR-YFR 758
           KL + R ++T+N +     G +YDYF    + ++  +  V D  +RV + YL +M  +F+
Sbjct: 118 KLRSMRVEITVNVIKTMNFGMLYDYFDVLPE-EENALLKVEDRLIRVNKRYLSMMSPFFK 176

Query: 759 --FYGRIALKPDNHE 797
             FYG +    + +E
Sbjct: 177 ALFYGELGEDKEIYE 191


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 402 PEEMKEMFTAEEVRMINVNGERHG--TITARINDKENFEVTTLRIDMVTDGRFADVQFTK 575
           P+      T +  ++  V  E+HG   +  +IN+K N+++    +    DG+  DV F  
Sbjct: 130 PQYQSRKTTVDAGQLTQVEVEKHGGQLVVTKINEKSNYDLKPGDVITQVDGK--DVYFRA 187

Query: 576 DWKLDANRRDLTI 614
           D +    + +LT+
Sbjct: 188 DIENLKGKVELTV 200


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 318 EIRIAGGAVRDLLMGLTPKDL-DFATTATPEEMKEMFTAEEVRMINVNGERHGTITA 485
           +++   G + +LL       L DF+ T T E + +MF AE V    V G +  T+++
Sbjct: 304 QLQTRNGLLDELLASFDTNALADFSKTVTSENITKMFIAEAVAEEKVAGTKDRTLSS 360


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 184  NLLRLGSVTLHVPLSWKNCPTPKILLHALNITKKKFQIKVAK 59
            N LR     +H    WK+    K+L  AL+ T +K  +KV K
Sbjct: 1602 NFLRTVDKFIHTVECWKSVAMAKVLKLALDSTDEKVVVKVGK 1643


>AF016681-14|AAB66169.1| 1119|Caenorhabditis elegans Guanylyl
           cyclase protein 21 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 555 ADVQFTKDWKLDANRRDLTINSMFLGFDGSVY---DYFYGYEDLQKRRVAFVGDPDVRVK 725
           +DV+FT+  +L+  +   ++NS  + F G V    D F  YE  Q+  +  + D D    
Sbjct: 527 SDVEFTRSIRLEIAKLQESVNSNVIEFVGMVVQSPDVFVVYELAQRGSLKDILDNDDMPL 586

Query: 726 EDYLR 740
           +D  R
Sbjct: 587 DDVFR 591


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,869,453
Number of Sequences: 27780
Number of extensions: 393853
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)