Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E03
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 720 VKEDYLRIMRYFRFYGRIALKPDNHEEETLXVLKNNVHGLG--NISGERIWGEL 875
           V+  +++++  F    R     D  EEE + V+  N  G+G  N +GE + GE+
Sbjct: 337 VRVVFIQVLPRFLLIERPKKDEDEEEEEEVVVVGRNGAGVGAMNANGEAV-GEV 389


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 797 LMIVWF*CYSSIKSEITHNSQVIFFDS 717
           L +VW  CY  I   +    +V++F S
Sbjct: 213 LAVVWIMCYFCIWKGVKWTGKVVYFTS 239


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 797 LMIVWF*CYSSIKSEITHNSQVIFFDS 717
           L +VW  CY  I   +    +V++F S
Sbjct: 266 LAVVWIMCYFCIWKGVKWTGKVVYFTS 292


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 222 NPIVIKVDSPEFKSIF 269
           NP++  V +PEF+  F
Sbjct: 673 NPVIYTVFNPEFRKAF 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,207
Number of Sequences: 438
Number of extensions: 4362
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)