Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E02
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.30 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   6.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.7  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    21   8.7  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 23/60 (38%), Positives = 25/60 (41%)
 Frame = +3

Query: 612 RGVAAAAGASSCLRRHLCFDRGRDN*RLLHXRCVALLQVPDDEDGGPAKPHPVRNLXRRH 791
           RG A A GA   L  H           L   R VA +QVP    GG   P P R+  RRH
Sbjct: 291 RGAARADGAGGPLHDH--------RPALAQQRRVAAVQVPQLAGGGRRGPGPARS--RRH 340


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 346 PLSNVETRPSPYSQHASHPSDHS 414
           P +  + RP+P S++A  P+D++
Sbjct: 252 PATKSKPRPAPASRNAPEPADNN 274


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 696 VAFNYHGHDQSRDDDEGKSWRRQPQQLLAE 607
           V  NY+ H Q R D+  + ++   ++ L E
Sbjct: 397 VTVNYYRHKQKRRDERERYFKGLDEEKLPE 426


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 182 PVRTCRQKQHSHS 144
           P+ TC +KQH  S
Sbjct: 240 PITTCNKKQHLES 252


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
 Frame = +1

Query: 265 LLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASH---PSDHSLIYLGTM 435
           L +  ++     SS  NV R  D  P     VE  P   S +  +   P  ++    G +
Sbjct: 47  LTESEEKSGGSYSSNKNVSRA-DHSPV-FGKVEPVPHTSSFNMGYLVSPYSYANGAAGPI 104

Query: 436 ALTLIMIYGAA-RGKPAYLLPFFC 504
            +++    G A  G P   LPFFC
Sbjct: 105 PVSMASKMGLAPTGHPGAALPFFC 128


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 463 AARGKPAYLLPFFC 504
           A  G P   LPFFC
Sbjct: 7   APTGHPGAALPFFC 20


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 625 AATPRGRERDGSPQSRHG 572
           +A+P   +R G+P+S +G
Sbjct: 934 SASPASSDRSGTPRSTNG 951


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 277 LDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHP 402
           L +ES+ +    +V R  D+ P P      R  P +    HP
Sbjct: 81  LPKESNAIIHIYDVHRNADIYPDPEKLDPDRFLPENVQKRHP 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,730
Number of Sequences: 336
Number of extensions: 4482
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)