Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E02
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 32 0.46
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 32 0.61
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 30 1.9
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 30 2.5
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 3.3
12_02_1233 + 27224219-27225607 29 4.3
08_02_1317 + 26095772-26096191,26096301-26096540,26096647-260967... 29 4.3
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 29 5.7
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 29 5.7
01_06_1808 - 40023533-40023966,40024078-40024204 29 5.7
12_02_0267 - 16588799-16588826,16589333-16590144 28 7.5
06_01_0467 + 3316023-3316370 28 7.5
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 28 7.5
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 28 9.9
02_05_0988 - 33340477-33340953 28 9.9
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 32.3 bits (70), Expect = 0.46
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 792 DAVAXDYERGEALQGRRPHRQVLVATPHNXNAVAFNYHGHDQSRDDDEGKSWRRQPQQLL 613
DA A +YE+ G+RPH+ T H+ + ++H HD + R+ Q+ L
Sbjct: 1294 DAAAGEYEK--VRNGKRPHK-----TGHHRHHHRHHHHHHDHRSSSEPNDKKRQDGQKAL 1346
Query: 612 AEGN 601
GN
Sbjct: 1347 EGGN 1350
>09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 31.9 bits (69), Expect = 0.61
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +1
Query: 163 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 339
CL +++ IILG +H L+++AL + PR+L +D + P+S VG+ DV+
Sbjct: 832 CLDMKS--IILGKYHYMLYILALAM------QPRMLLTVDEDLKPLSVPVCVGQAVDVVG 883
Query: 340 ----PTPLSNVETRPSP 378
P ++ +T +P
Sbjct: 884 QAGRPKTITGFQTHSTP 900
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +1
Query: 163 CLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVL- 339
CL +++ ILG +H L+++ L + PR+L +D + P+S VG+ DV+
Sbjct: 792 CLDMKS--TILGKYHYILYIIVLAM------QPRMLLTVDEDLKPLSVPVRVGQAVDVVG 843
Query: 340 ----PTPLSNVETRPSP 378
P ++ +T +P
Sbjct: 844 QAGRPKTITGFQTHSTP 860
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 600 ATGLRNQGMDLTQVTQIASCRQNGDSKVEDL 508
+ GL N VTQI SC N D +VE+L
Sbjct: 95 SVGLSNSESRPDSVTQIQSCLNNADERVEEL 125
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 82 QELVPEYAPTIFPICR--TPLNFSSA 11
Q+ P+Y P I+P+C T LN SSA
Sbjct: 2202 QDANPDYLPAIYPVCANLTSLNISSA 2227
>12_02_1233 + 27224219-27225607
Length = 462
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 666 SRDDDEGKSWRRQPQQLLAEGNAT 595
SR + EG +WR + + + EGNAT
Sbjct: 182 SRTEPEGSTWRWEERSFVREGNAT 205
>08_02_1317 +
26095772-26096191,26096301-26096540,26096647-26096712,
26096836-26096904,26097004-26097075,26097164-26097382,
26097480-26097581
Length = 395
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 540 GNWLSVLLASNPCLDCGDPSRSLPRGVAAAAGASSCLRRHLCFDRG 677
G+++S LL+S+P LD G P G C LC D G
Sbjct: 8 GDYISSLLSSSPRLDFGVPVLDAIVAPGGGGGGGDCGLDKLCGDPG 53
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 771 ERGEALQGRRPHRQVLVATPHNXNAVAFNYHGHDQSRDD-DEGKSWRRQP 625
E + RR HR+ A A +Y+G ++ D+ +E + ++R+P
Sbjct: 972 EDNDGRHHRRHHREAAAAAEERRRPAAGDYYGEEEEDDESEEEQHFKRRP 1021
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 268 LDELDRESSPVSSWSNV-GRTGDVLPTPLSNVETRP 372
+D L P+SS+S + G D LP+P SNV RP
Sbjct: 855 VDTLPSTIRPLSSYSLLDGSLDDGLPSPASNVSFRP 890
>01_06_1808 - 40023533-40023966,40024078-40024204
Length = 186
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -1
Query: 400 DVKHVESMGWDEFPHLTVVWAAHLRCAPHCSMNSLGMT 287
DVKHV +GWD + T + R AP S S T
Sbjct: 104 DVKHVAHIGWDGSTNTTTSLRSWNRAAPPSSSASAAST 141
>12_02_0267 - 16588799-16588826,16589333-16590144
Length = 279
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Frame = +1
Query: 229 LGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGDVLPTPLSNVETRPSPYSQHASHPSD 408
L V I +PR +DE+D + SPV G +P + + HP
Sbjct: 137 LDVDECISSNPRQIDEIDDDISPVLCGEANSLVGINVPCEVITQLLMEDMEGESGQHPKV 196
Query: 409 HSLIYLGTM--ALTLIMIYGAARGK 477
S++ LG + + I +Y G+
Sbjct: 197 LSIVGLGGLGKSTLAIQVYNKIHGR 221
>06_01_0467 + 3316023-3316370
Length = 115
Score = 28.3 bits (60), Expect = 7.5
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -2
Query: 720 ATPHNXNAVAFNYHGHDQSRDDDEGKSWRRQPQQ--LLAEGNATGLRNQGMDLTQVTQIA 547
ATP N +++ + DDD+G + Q ++ L G + G + G+ L + A
Sbjct: 26 ATPSNVDSIIAMGGNATAAEDDDDGDGFEEQEEENTQLRYGLSPGGHHCGLLLARSAPPA 85
Query: 546 SCRQNGDSKVEDL--KTEEGQQIGRFPTSG 463
SC + L + EG +I R SG
Sbjct: 86 SCAATLPTPPRRLRMREREGDRIQRKEESG 115
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -1
Query: 82 QELVPEYAPTIFPICR--TPLNFSSA 11
+++ PEY P I P+C T LNFS A
Sbjct: 324 RDVNPEYLPAIHPVCANLTSLNFSFA 349
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 654 RHLCFDRGRDN*RLLHXRCVALLQVPDDEDGGPAKPHPVRNL 779
R L F G+DN L+H V +L V ++ P + H VR L
Sbjct: 180 RQLSFSLGKDNFCLIHVSLVPVLGVVGEQKTKPTQ-HSVREL 220
>02_05_0988 - 33340477-33340953
Length = 158
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 558 LLASNPCLDCGDPSRSLPRGVAAAAGAS 641
LL CG P R L RG AAAA A+
Sbjct: 14 LLLPTASRPCGAPPRRLARGAAAAAAAA 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,118,245
Number of Sequences: 37544
Number of extensions: 569746
Number of successful extensions: 1796
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -