Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_E02
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   5e-07
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)                       30   2.5  

>SB_39479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 29/104 (27%), Positives = 48/104 (46%)
 Frame = +1

Query: 154 CCFCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDELDRESSPVSSWSNVGRTGD 333
           CC C+ VR GTI+LG  HLF+H+  + VLA ++  P + +E         ++  V R+  
Sbjct: 20  CCCCMDVRIGTIVLGFCHLFIHIAGVVVLAQMLLHPEVYEE-----KYYQTYGTVPRSAI 74

Query: 334 VLPTPLSNVETRPSPYSQHASHPSDHSLIYLGTMALTLIMIYGA 465
             P      +    PY         HSL++   M   ++++  A
Sbjct: 75  SNPNKTMFAQQPNFPYRGDVDRLDMHSLMFTVVMVCLIVLLVKA 118


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 160 FCLHVRTGTIILGSWHLFLHLVALGVLAAIVRDPRLLDE 276
           FCL +      LG++HLF  L+ + V  A++ D   +DE
Sbjct: 494 FCLKIFGTGKKLGTYHLFSSLIIMSVFVAVIVDNLEIDE 532


>SB_23376| Best HMM Match : GPS (HMM E-Value=1.2)
          Length = 368

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 313 NVGRTGDVLPTPLSNVETRPSPYSQHA-SHPSDHSLIYLGTMALTLIMIYGAARGKPAYL 489
           N   T    P+PL +   RP P S+HA +  +D  LIYL      ++     +R  PA L
Sbjct: 207 NSSLTDGFFPSPLKSAIARPLPKSKHAKTVENDVRLIYLTPQVAKIMEGLTLSRMLPAVL 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,927,830
Number of Sequences: 59808
Number of extensions: 611718
Number of successful extensions: 1630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)