Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_E02
(802 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 32 0.55
U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical pr... 31 0.73
AF317421-1|AAK69599.1| 235|Caenorhabditis elegans lysosomal-ass... 31 0.73
Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical pr... 30 2.2
AC024817-14|AAY86301.1| 354|Caenorhabditis elegans Hypothetical... 29 2.9
AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical ... 29 3.9
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 29 5.1
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 534 FDGNWLSVLLASNPCLDCGDPSRSLPRGVAAAAGASSCL 650
F N+L VL N D DP +S+P G +A G SS +
Sbjct: 261 FFANFLGVLAGVNMSGDLKDPHKSIPLGELSAVGVSSTI 299
>U53338-4|AAA96192.3| 235|Caenorhabditis elegans Hypothetical
protein C05E11.3 protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 133 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 231
E E+ C C C HV+TG I+G H+ + L L
Sbjct: 33 ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66
>AF317421-1|AAK69599.1| 235|Caenorhabditis elegans
lysosomal-associated transmembraneprotein protein.
Length = 235
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 133 ERGSEWLC-CFCLHVRTGTIILGSWHLFLHLVAL 231
E E+ C C C HV+TG I+G H+ + L L
Sbjct: 33 ESSDEYRCLCNCFHVKTGAFIIGCVHVLMILFFL 66
>Z68159-7|CAA92286.1| 604|Caenorhabditis elegans Hypothetical
protein C33D9.8 protein.
Length = 604
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -2
Query: 666 SRDDDEGKSWRRQPQQLLAEGNATGLRNQGMDLTQVTQIASCRQNGDSKVEDLKTEEGQQ 487
++D E + + Q+L AE NA L++ ++++ + + KVE LK EEG
Sbjct: 121 AKDKLEIYETQEENQKLEAEVNALRKEVLESKLSEQSELSKVNETLNMKVESLKIEEGVS 180
Query: 486 IG 481
+G
Sbjct: 181 VG 182
>AC024817-14|AAY86301.1| 354|Caenorhabditis elegans Hypothetical
protein Y54G2A.45 protein.
Length = 354
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 534 FDGNWLSVLLASNPCLDCGDPSRSLPR 614
FD NW ++ ++ ++C DPS LPR
Sbjct: 88 FDNNWPTLKVSKRFLVNCSDPSPILPR 114
>AF047658-1|AAC04418.2| 348|Caenorhabditis elegans Hypothetical
protein K03H6.2 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 534 FDGNWLSVLLASNPCLDCGDPSRSLP 611
FD NW ++ L+ ++C DPS LP
Sbjct: 89 FDNNWPTMKLSKRILVNCSDPSPILP 114
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
T23F2.2b protein.
Length = 1538
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = -2
Query: 657 DDEGKSWRRQPQQLLAEGNATGLRNQGMDLTQVTQIASCRQNGDSKVEDLKTEEGQQIGR 478
+DE K+ RQ ++ E + L+N+ + L++ Q+A N + K +E + + R
Sbjct: 1111 EDERKTLERQLKRSQEERSL--LKNKNVQLSKDLQVAMAELNVYKSEKPHKDDEPKNLER 1168
Query: 477 FPTSGAVDHNQCES 436
+ + +HN+ E+
Sbjct: 1169 SSSFSSFNHNKSEN 1182
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
T23F2.2a protein.
Length = 1534
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = -2
Query: 657 DDEGKSWRRQPQQLLAEGNATGLRNQGMDLTQVTQIASCRQNGDSKVEDLKTEEGQQIGR 478
+DE K+ RQ ++ E + L+N+ + L++ Q+A N + K +E + + R
Sbjct: 1111 EDERKTLERQLKRSQEERSL--LKNKNVQLSKDLQVAMAELNVYKSEKPHKDDEPKNLER 1168
Query: 477 FPTSGAVDHNQCES 436
+ + +HN+ E+
Sbjct: 1169 SSSFSSFNHNKSEN 1182
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 322 RTGDVLPTPLSNVETRPSPYSQHASHPSDH 411
R+ D LPT L NV TRP+ + P D+
Sbjct: 432 RSSDTLPTRLKNVRTRPTEKQIASVLPGDN 461
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,153,074
Number of Sequences: 27780
Number of extensions: 428511
Number of successful extensions: 1276
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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