Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D24
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    30   0.40 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    29   0.70 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    28   2.1  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   4.9  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   8.6  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 201 SHDGSSVVAADDNLDINARVEEERRRMQPTKLESFFAITK 320
           S    +V  A+  +D++A   E+RRR + +KL SFFA  K
Sbjct: 368 SGSSPTVSRANSVIDVDAYPPEKRRRKEQSKLLSFFAKQK 407


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = +3

Query: 513 SNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSIYLHVYIVPSGKSPDPN 689
           S   ++H  L+   WY     D +++   S  P + ++ NG IY +V  +   +   PN
Sbjct: 151 SGFFYKHPLLLKYQWYWRVEPDVAFTCDISYDPFYYMEENGKIYGYVVALKELEDTVPN 209


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)
 Frame = +3

Query: 360 SMFRQPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEFNTNFDNSNLIWQHSG 539
           S+  Q   P+  + NPS AP A  VN+F    ++     L E+      D+  L+ Q +G
Sbjct: 258 SLVPQMPYPQNGMYNPSVAPPASLVNLFQQEQLIQNQ-NLDEKRQKLERDHM-LMAQCAG 315

Query: 540 LVYGDWYSGPNGDGSYSHSASITPSFAL-KNNGSIYLHVYIVPSGKSPDPNNRQNFAGPY 716
           L+          D S+     I+   +    +   Y  VY +  G+ P      +F   Y
Sbjct: 316 LM-------TRSDKSFIARIQISQLMSEDPESDDFYYRVYSIIRGRKPSEEEASHFIQTY 368

Query: 717 I 719
           +
Sbjct: 369 L 369


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -2

Query: 645 DKWIHYFLTQMMVLCLLSDCMIHHHSDLNTNLHTPNHCAAKLNLNC 508
           ++W    +  + V  LL+   +H+  DL     T  HC  +   NC
Sbjct: 363 ERWGDAPVHSLAVGLLLNRSQVHYFRDLGYQHSTIQHCGQEYGCNC 408


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = -1

Query: 628 FFNANDGVMLAE*LYDPSPFGPEYQSPYTKPL--CCQI--KFELSKFVLNSCS 482
           F    +G+ L E   DP   G  YQSP    L  CC++     +++FV  S S
Sbjct: 45  FLRVREGLYLYENGLDPYSGGVFYQSPLLLILNYCCELLGGISVTRFVYTSIS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,383
Number of Sequences: 5004
Number of extensions: 65473
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)