Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D24
         (919 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                     111   1e-24
SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)                   29   5.3  
SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)            28   9.2  

>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score =  111 bits (266), Expect = 1e-24
 Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
 Frame = +3

Query: 318 KSLIIRALVVYFITSMFR-QPSAPKTDINNPSSAPRAPAVNMFANGTILDMYCYLSEQEF 494
           K ++ R  + +F+T++FR +   P +D  +PS     PA N+F     +++Y YLSE   
Sbjct: 64  KGILFRIFIFWFVTNLFRGKQQQPSSD--SPSGMSLKPATNLFNTNQKMELYVYLSELSN 121

Query: 495 NTNF-DNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSIYLHVYIVPSG 671
             NF D  +LIW    L +G+W  GP  DG +  S  +  S  L NNGS+Y HVYI   G
Sbjct: 122 FQNFEDKGSLIWHQKDLQFGNWTDGPAKDGVFMFSTQLKTSENLMNNGSLYAHVYITKIG 181

Query: 672 KSPDPNNRQNFAGPYISVEXXXXXXXXXXXXXXXXXXXXGQTEKSEEEIKKAETVKEEXV 851
           K+P+P +   F    +                       G TE   E+  K    ++E +
Sbjct: 182 KNPNPAS-PKFDKRAVVYRSKMLTVYKKRRVSKTVNLLYGSTEAPPEQQIKDPKKEQEII 240

Query: 852 SHXHPNLTIN 881
           ++ HPNLTIN
Sbjct: 241 NYWHPNLTIN 250


>SB_40156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 606 TPSFAL-KNNGSIYLHVYIVPSGKSPDPNNRQNFAGPY 716
           T +FA+ K+N  I+      P GK PD NN   F G +
Sbjct: 56  TTTFAISKDNREIFKQKLYFPGGKEPDANNAIPFQGTF 93


>SB_20596| Best HMM Match : DUF1237 (HMM E-Value=6.4)
          Length = 526

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 35  KPVKHYVIVNEISSSHTIKCKLVKL 109
           K   HYVI     +SHT+KC+L+ L
Sbjct: 183 KVAAHYVIQVPSGNSHTLKCRLMSL 207


>SB_57805| Best HMM Match : Myotub-related (HMM E-Value=4.2)
          Length = 167

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +2

Query: 23  TYNLKPVKHYVIVNEISSSHTIKCKLVKLFFC--YH 124
           TY+  P+ H    + +  SH + C  + + FC  YH
Sbjct: 31  TYHTLPISHCATYHTLPISHCVTCHTLPISFCATYH 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,349,312
Number of Sequences: 59808
Number of extensions: 460000
Number of successful extensions: 1116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)