Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D24
(919 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical pr... 117 1e-26
AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical ... 112 3e-25
Z83228-6|CAB05736.1| 241|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 28 8.1
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 28 8.1
AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical ... 28 8.1
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 28 8.1
>Z50795-2|CAA90663.1| 618|Caenorhabditis elegans Hypothetical
protein R166.2 protein.
Length = 618
Score = 117 bits (281), Expect = 1e-26
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 10/199 (5%)
Frame = +3
Query: 324 LIIRALVVYFITSM----FRQPSAPKTDIN-NPSSAPRA-PAVNMFANGTILDMYCYLSE 485
+I +A+ +YF+ SM FR S+P D N S+A A+NMF N I D+Y Y+ +
Sbjct: 26 MIKQAITIYFVVSMVSGFFRPSSSPGNDGNVTASTAGNGNKAMNMFPNHQIFDLYVYMDD 85
Query: 486 QEFN-TNFDNS--NLIWQHSGLVYGDWYSGPNGDGSYS-HSASITPSFALKNNGSIYLHV 653
+ FD++ LIW +G+ Y DW SG N DGS++ H TP+ AL N S++LH
Sbjct: 86 SDLPFRQFDSAPEKLIWMRNGMKYDDWISGDNEDGSHTIHKNFPTPA-ALLRNDSLWLHT 144
Query: 654 YIVPSGKSPDPNNRQNFAGPYISVEXXXXXXXXXXXXXXXXXXXXGQTEKSEEEIKKAET 833
+IV +G+SP+P +R F I + G++E+S+E++ KA+
Sbjct: 145 FIVKAGQSPNPKDRNYFKNQII-YKSYQLNKYKKKYYRKTSNLLTGESEQSDEDLAKAQI 203
Query: 834 VKEEXVSHXHPNLTINWVM 890
+K E ++H HPN++I+ V+
Sbjct: 204 MKYEVLNHWHPNISISLVV 222
>AC006615-4|AAK68233.2| 602|Caenorhabditis elegans Hypothetical
protein C36B7.6 protein.
Length = 602
Score = 112 bits (270), Expect = 3e-25
Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 5/202 (2%)
Frame = +3
Query: 297 ESFFAITKSLIIRALVVYFITSMFRQPSAPKTDINNPSSAP---RAPAVNMFANGTILDM 467
+S+ +I ++ + ++ YFI++M + ++ N+ ++A P+VN+F G I D
Sbjct: 22 QSWGSILFGILKQCMMFYFISTMLGKMGGSQSKTNSTAAANVKGMPPSVNLFPPGQIYDF 81
Query: 468 YCYL--SEQEFNTNFDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 641
Y YL SE+ FN +F+N L Q GL YGDW GPN DGSY + L N S
Sbjct: 82 YLYLDDSEERFN-HFENGFLFAQKKGLRYGDWTGGPNKDGSYVFEKTFPTPEVLLRNQSY 140
Query: 642 YLHVYIVPSGKSPDPNNRQNFAGPYISVEXXXXXXXXXXXXXXXXXXXXGQTEKSEEEIK 821
YLH ++V +G+SP+P ++ N+ + G +E+S+E++
Sbjct: 141 YLHAFLVKNGQSPNPADK-NYIRREVVYGVHQLNKYKKKHYKKTANLLTGVSEQSDEDLA 199
Query: 822 KAETVKEEXVSHXHPNLTINWV 887
KAE +K E ++ HPN+++N V
Sbjct: 200 KAEIMKFEILNFWHPNMSVNIV 221
>Z83228-6|CAB05736.1| 241|Caenorhabditis elegans Hypothetical
protein F52F12.7 protein.
Length = 241
Score = 31.5 bits (68), Expect = 0.87
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 573 GDGSYSHSASIT-PSFALKNNGSIYLHVYIVPSGKSPDPNN 692
GDG S S+T PSF K+ G + H+++ + P+P N
Sbjct: 149 GDGFILASRSVTVPSFKSKHKGKVRAHLHLAGARFRPNPEN 189
>Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical
protein T22H2.2 protein.
Length = 527
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +3
Query: 216 SVVAADDNLDINARVEEERRRMQPTKLESFFAITKSLIIRALVVYFITSMFR 371
S++ DDN D++++ R PT + ++ +T ++I +L S+ R
Sbjct: 195 SLLTDDDNKDVSSKSNTHSERCDPTTIIAYLLLTGLVLITSLPTSLDASVIR 246
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 504 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 641
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 439
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 504 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 641
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 439
>AL022473-1|CAJ43448.1| 339|Caenorhabditis elegans Hypothetical
protein H27C11.1b protein.
Length = 339
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 504 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 641
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 298 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 339
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 504 FDNSNLIWQHSGLVYGDWYSGPNGDGSYSHSASITPSFALKNNGSI 641
F L WQ +YGD + N D HSAS +P+ + SI
Sbjct: 398 FGEGLLFWQ----LYGDIFDDANDDSYLEHSASCSPTDSQYTTDSI 439
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,456,412
Number of Sequences: 27780
Number of extensions: 373314
Number of successful extensions: 922
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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