Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D22
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot... 113 8e-27
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 111 3e-26
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 28 0.53
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 1.6
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 2.1
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 26 2.1
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 2.8
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 25 3.7
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc... 24 6.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 24 6.5
>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 113 bits (272), Expect = 8e-27
Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Frame = +2
Query: 29 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 202
K++ + GKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+ GIW C K CK+
Sbjct: 6 KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKV 65
Query: 203 VAGGAWVFSTTAASSCRSAVRRLREV 280
+AGGAW +T AA+S RS +RRLRE+
Sbjct: 66 LAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 111 bits (268), Expect = 3e-26
Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
Frame = +2
Query: 29 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 202
K++ + GKYG RYGASLR+ V+K+EV QH++Y C FCG+ +KR+ GIW C K C +T
Sbjct: 6 KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKT 65
Query: 203 VAGGAWVFSTTAASSCRSAVRRLREV 280
+AGGAW +T AA+S RS +RRLRE+
Sbjct: 66 LAGGAWTVTTAAATSARSTIRRLREM 91
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 0.53
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 207 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 100
+T +L ++ Q+ T F+A + +NE +FA W TS
Sbjct: 69 STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 110 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 199
+H K T C C + +K C +W C+ CK+
Sbjct: 15 RHRKITSCRECHR--LKLKCDRVWPCENCKK 43
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 2.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 60 VPYLPSNSNLFGTFGHFGK 4
+ Y+PSN NLF H+G+
Sbjct: 352 IGYIPSNYNLFAFICHYGQ 370
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 119 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 208
KY C CG + C I S RC + A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 145 GCYETFLCRHLVL*AMQEDCSRRSLGILH 231
G + +LC+ L + E C S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 3.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 201 VLLHRLQDQMPTQERFIASLPQNEQV 124
+L +L +Q+PT R AS+P QV
Sbjct: 32 LLKQKLTEQLPTTFRITASIPHATQV 57
>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 159 RFIASLPQNEQVYFA 115
RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 17 PNVPKRLELLGKYGTRYGASLRKMVKKM 100
PN +RLE+L K R+ M+KK+
Sbjct: 774 PNEEERLEVLQKLANRFHIENAAMLKKL 801
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,951
Number of Sequences: 5004
Number of extensions: 25838
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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