Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D22
         (368 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                28   2.1  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.6  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   3.6  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   3.6  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        27   4.8  
SB_33879| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   6.3  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)                      26   8.3  

>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  GASLRKMVKKMEVTQHAKYTCSFCGK 145
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 14/76 (18%), Positives = 31/76 (40%)
 Frame = -3

Query: 300 VYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 121
           + + + F   N   A +   + V     +    +L+         +++  AS  + E  +
Sbjct: 122 ILHHSIFWGNNFWFAAVTPPSDVTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEF 181

Query: 120 FACWVTSIFLTILRRE 73
           + CWV S F+T  + +
Sbjct: 182 YECWVASFFITTAKTQ 197


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 147 SLPQNEQVYFACWVTSIFLTIL 82
           S P +  V FA W  SIFLTI+
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTII 154


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 130 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 270
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 125 TCSFCGKDAMKRS 163
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -3

Query: 255 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLT 88
           D H    V EN +    T    RL D +   +  +  +  +  VYF       FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_33879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 7   TKMAKRTKKVGITWQIWHTLRCLST*NGQKDGSNPTRK 120
           T +    K  GI W + +      T  G++DGS+  RK
Sbjct: 63  TNVTGAVKIAGINWYVMYRFTLSYTTKGEQDGSSSQRK 100


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 264 LTADLHDEAAVVENTQAP 211
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 264  LTADLHDEAAVVENTQAP 211
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


>SB_148| Best HMM Match : PRKCSH (HMM E-Value=2.4)
          Length = 438

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 218 KLLLLQSSCIAYKTRCRHKNVS*HPYHKMSKYTLRVGL 105
           +++ LQS    YK  C  KNV  HP      Y LR+GL
Sbjct: 110 RVVTLQSDSYPYK--CYIKNVLSHPQESQESY-LRLGL 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,059,520
Number of Sequences: 59808
Number of extensions: 205763
Number of successful extensions: 536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)