Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D22
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   3.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   8.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 86  FYVERHRNVCHICQVIPTFLVRLAIL 9
           F + RH  + H   VIP   + L  L
Sbjct: 246 FSISRHYGILHATYVIPAVTMMLLTL 271


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 190 SLTRPDADTRTFHSILTTK*ASILCVL 110
           + TRP   T TFH IL  K A+ L VL
Sbjct: 334 TFTRPCGITLTFHEIL--KRANTLFVL 358


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 56  GTRYGASLRKMVKKMEVTQHAKYTCSFCGK 145
           G  +  S +  V     T    YTC  CGK
Sbjct: 210 GKGFTCSKQLKVHTRTHTGEKPYTCDICGK 239


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 122 YTCSFCGK 145
           YTC  CGK
Sbjct: 372 YTCDVCGK 379


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 176 RCRHKNVS*HPYHK 135
           +CR+ N S  PY+K
Sbjct: 435 QCRYPNASVTPYNK 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,891
Number of Sequences: 438
Number of extensions: 2049
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)