Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D20
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    31   0.12 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   4.7  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   6.2  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.2  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    25   8.2  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 199 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 378
           S  ++  I  ++ R    P+      S +++ W +K    K    AP   L+   +VF Y
Sbjct: 25  SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82

Query: 379 AIN-YGRIKHHKNY 417
           A   Y  I+HH+ +
Sbjct: 83  ASEYYYHIRHHEEH 96


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = +1

Query: 91  GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 267
           G   N    +Y ++  P    PY P  Y G    PF Q +   +  + FG  S+   +VA
Sbjct: 28  GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86

Query: 268 GAFSRAWWRWQHKYVQPKKVGMAPFYQ 348
               +    + +  + P+ +    F Q
Sbjct: 87  DYGQQQQQMYGYNGMMPQTMNNTGFMQ 113


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 111 SHIFRKARCTFLKINSSRYLPNTYFSFSER 22
           S + R A   FLK NSS+++P    + S R
Sbjct: 23  SLLARPANLQFLKTNSSKFVPQVTANVSRR 52


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -3

Query: 276 ESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMY 145
           ESS HG  SL  A +P T  V   L  W+ +F+    R+    Y
Sbjct: 24  ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 85  ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 189
           A   S+N A+G  P+ Y P    P  P  Y  +P+
Sbjct: 87  APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 482 NKTDYILIHTATGTESVL*WY 420
           N  D I +H  T  ESV+ WY
Sbjct: 473 NNIDRISLHVQTTNESVIKWY 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,022
Number of Sequences: 5004
Number of extensions: 47189
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)