Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D20
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0150 - 20215070-20217577 31 0.90
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 30 1.2
09_04_0385 + 17167174-17167440,17173321-17173962 30 1.2
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 30 1.2
02_05_0516 + 29694631-29695182 30 1.2
08_02_1239 + 25491034-25492378,25493719-25494575 29 3.6
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163... 28 6.3
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 8.4
>02_04_0150 - 20215070-20217577
Length = 835
Score = 30.7 bits (66), Expect = 0.90
Identities = 27/106 (25%), Positives = 45/106 (42%)
Frame = -3
Query: 324 LLRLYVLMLPSPPGSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSIVAGRIVRPMY 145
LLR V + +P G S G GR SL A E + + + +S V G V+ ++
Sbjct: 130 LLRKKVFAMVAPAGDAFSRGVGRYSLFDAVEDAARMIWIGY----LVYSYVHGFAVKSLF 185
Query: 144 SRIILLGVITESHIFRKARCTFLKINSSRYLPNTYFSFSERYQLIG 7
++L + + + + ++A C L S N QL+G
Sbjct: 186 ---VILWIFSVAKLCKRAACIHLAKGSFDLAKNATLVSGYMAQLVG 228
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 115 GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 273
GD+ Y P Y P Y+G+P P + L+ +G TPS V A
Sbjct: 15 GDHYPYYKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 300 LPSPPGSTESSGHGRRSLAAATEPRTD 220
LP P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Frame = +1
Query: 1 RPADELVSFGKTEISIR*VPTRIDF*KSASGFSKNMAFGDYPKEYNPA--VH---GPYDP 165
RP+D + T S VPT ++AS ++ + G K P+ H P
Sbjct: 212 RPSDNTATNTSTSNSSVKVPTSTATKENASNGQQSRSSGVSSKNSRPSSSTHLSSRPSSS 271
Query: 166 ARYYGKPDTPFSQLKLNEIGSWFGRRSKTPS 258
++Y+ KP+TP K+N W +S +PS
Sbjct: 272 SQYHSKPNTPVGHPKVNPQLEW-KPKSVSPS 301
>02_05_0516 + 29694631-29695182
Length = 183
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +1
Query: 229 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 336
W RRSK+ PS A AG + WW W ++ KK G A
Sbjct: 67 WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105
>08_02_1239 + 25491034-25492378,25493719-25494575
Length = 733
Score = 28.7 bits (61), Expect = 3.6
Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 348 LVEWSHAN--LLRLYVLMLPSPPGSTESSGHGRRSLAAATEPRTDFVQLQLAEWSIRFSI 175
LV WSH N LL +Y M P GS + G AAA E R L W +R+SI
Sbjct: 447 LVGWSHDNGELLLVYEYM---PNGSLDQHLFG----AAAAERR-------LLGWDLRYSI 492
Query: 174 VAG 166
VAG
Sbjct: 493 VAG 495
>12_02_0874 +
23915303-23915543,23915630-23915713,23915797-23916312,
23916426-23916482,23916630-23916802,23916886-23917014,
23917102-23917296,23917381-23917503,23918171-23918284
Length = 543
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 224 VRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLAWLHS 343
VR S A +R P + VE DG+ T++L +L W HS
Sbjct: 34 VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +1
Query: 145 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 324
+HG KPD P L LN+ GS+ SK + + AWW + ++ +
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690
Query: 325 VG 330
G
Sbjct: 691 TG 692
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,767
Number of Sequences: 37544
Number of extensions: 317247
Number of successful extensions: 983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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