Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D17
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009) 29 3.9
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24) 28 6.7
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 28 8.9
SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 28 8.9
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 400 QGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEP 501
+GSY D DG +RT++Y + G+ H P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRP 1775
>SB_39937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 621 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEGL 496
GHG+GM G G+GV +G G+GQ G G VG+G+
Sbjct: 196 GHGTGMGQGVGQGMGQGVGQGMGQGMGQGVGQ-GTGQGVGQGV 237
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 621 GHGSGMHNRSGVHNGRGVHKGT-CGVGQRGGDFGNFSNVGEG 499
GHG+G G G+GV +G GVGQ G G VG+G
Sbjct: 188 GHGTGRWTGHGTGMGQGVGQGMGQGVGQGMGQ-GMGQGVGQG 228
>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
Length = 392
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -1
Query: 211 PEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRPGQRA*RPLLQ 74
P+Q P Q L Q +PQ+Q+ L Q Q P Q A P Q
Sbjct: 198 PKQQAPLPQQQAPLPQQQAPLPQQQAPLPQQQAPLPQQHAPLPQQQ 243
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 211 PEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRPGQRA*RP 83
P+Q P Q L Q +PQ+ + L Q Q P Q+A P
Sbjct: 212 PQQQAPLPQQQAPLPQQQAPLPQQHAPLPQQQAPLPQQKAPLP 254
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 621 GHGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 499
G G G N G NG G CG G GG+ G + G G
Sbjct: 38 GVGGGGGNGGGAGNGVGAGGCGCGGGNDGGNGGGGAGNGGG 78
>SB_10926| Best HMM Match : Pkinase (HMM E-Value=3e-24)
Length = 1102
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 618 HGSGMHNRSGVHNGRGVHKGTCGVGQRGGDFGNFSNVGEG 499
+G+GM N +G+ NG G+ G G+ + GG N + + G
Sbjct: 943 NGAGMENGAGMENGAGMENG-AGM-ENGGGMENGAGMENG 980
>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 DSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH-NGFNAVVHKEPL 504
DS++ ++ H + D DV S+V PD DY + + + ++ V+ +P+
Sbjct: 229 DSVSKNNIPPHISEDADVASQVISLVSPDSMIEEGDYVLEAYTDSYDDVIIDQPI 283
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 334 DVQDSLTGDSKTQHE---TRDGDVVQGSYSVVDPDGTKRTVDYTADPHNG 474
DV+D K++ E +DG +++G+ VV P G KR ++ + H G
Sbjct: 664 DVKDPELLPYKSKREELSVQDGCILRGARVVVPPQGRKRVLEDLHEAHPG 713
>SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 180 ICDWSRMCGVCRRNKACSNSRKCADQDSELE 88
+C W +MCG +R++ C + +C D E +
Sbjct: 171 MCGWEQMCGWEQRSR-CLDGSRCVDGSREAD 200
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/72 (22%), Positives = 27/72 (37%)
Frame = +1
Query: 295 EEYDAHPQYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNG 474
++Y + + + Y ++ D T HE D D + + D T D AD +
Sbjct: 573 DDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTNDEEADNYKT 632
Query: 475 FNAVVHKEPLAH 510
N + E H
Sbjct: 633 NNDTTNHEAPHH 644
>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 343 DSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH-NGFNAVVHKEPL 504
DS++ ++ H + D DV S+V PD DY + + + ++ V+ +P+
Sbjct: 102 DSVSKNNIPPHISEDADVASQVISLVSPDSMIEEGDYVLEAYTDSYDDVIIDQPI 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,374
Number of Sequences: 59808
Number of extensions: 256446
Number of successful extensions: 966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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