Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D15
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   68   9e-12
SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   58   9e-09
SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)                   56   4e-08
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)               32   0.53 
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)                       31   1.2  
SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)          30   2.8  
SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   29   3.7  
SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.5  

>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 68.1 bits (159), Expect = 9e-12
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 401 DMRREEERLKTFDQWPVTF-LTPEQLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDDPAA 577
           D++ E  RL TF  WP +  + P +L+  GFYYLG  D V C  C V +  W   D P  
Sbjct: 127 DLQSEHHRLTTFVDWPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEPDDLPWV 186

Query: 578 DHRRWAPQCPFV 613
           +H +W+P CP V
Sbjct: 187 EHEKWSPHCPLV 198



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = +2

Query: 734 TEAARLATFKDWPXCMRQKPEELAXAGFFYTGQGDKTKCFYCDGGLK 874
           +E  RL TF DWP     +P EL+ AGF+Y G  D  KC+ C   L+
Sbjct: 130 SEHHRLTTFVDWPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALR 176


>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = +2

Query: 392 DMPDMRREEERLKTFDQWPVTFLTPE-QLARNGFYYLGRGDEVCCAFCKVEIMRWVEGDD 568
           D  D+     R++TF+ WP T      +LAR GF + GR D V C  CK  + +W   D 
Sbjct: 128 DPNDLNLVGARVRTFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDR 187

Query: 569 PAADHRRWAPQCPFVRKQMYANAGGEAAAVGR 664
           P   HR + P CP +  ++  NA    A V R
Sbjct: 188 PIESHREFYPDCPLL-TELDKNANKVDATVTR 218



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/44 (47%), Positives = 25/44 (56%)
 Frame = +2

Query: 743 ARLATFKDWPXCMRQKPEELAXAGFFYTGQGDKTKCFYCDGGLK 874
           AR+ TF  WP        ELA AGF +TG+ D  +CF C G LK
Sbjct: 137 ARVRTFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLK 180


>SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)
          Length = 141

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
 Frame = +2

Query: 401 DMRREEERLKTFDQWPVTFL----TPEQLARNGFYYLGRGDE---VCCAFCKVEIMRWVE 559
           +M  E++RL+TF  WP   +    T E++A  GFY+    D+     C  C  E+  W  
Sbjct: 9   EMNMEKKRLETFKDWPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVCFKELDGWEP 68

Query: 560 GDDPAADHRRWAPQCPFVRKQMYAN 634
            DDP  +H++ +P+C FV+    +N
Sbjct: 69  EDDPWQEHKKHSPKCEFVKLNKSSN 93



 Score = 32.7 bits (71), Expect = 0.40
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = +2

Query: 737 EAARLATFKDWP---XCMRQKPEELAXAGFFY---TGQGDKTKCFYC 859
           E  RL TFKDWP      +   E++A AGF++       D  +CF C
Sbjct: 13  EKKRLETFKDWPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVC 59


>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
          Length = 851

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 570 LPPIIGDGRPSVPLYENKCMPTLGERRPLSVETNVGPVRPR 692
           LPP  G GRPSVP  E   +P   +   L + T+  P+ PR
Sbjct: 312 LPPDAGRGRPSVPKLE---LPASDDEMRLHISTDSPPMSPR 349


>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
          Length = 1604

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 874 F*PSVAIEAFRFVTLACIEESGLCQFLGFLAHTXRPVLEGGEPRG 740
           F PSV ++ +  VTL CI + G   F  +       V++G   RG
Sbjct: 442 FIPSVTVDEYDDVTLRCISDGGPIPFFTWRFKNENKVIQGSGDRG 486


>SB_11949| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-11)
          Length = 378

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 559 FDPPHNFYLTESTAHFVAATEVVESVAGQLFRRQKRNGPLIKCFQ 425
           F+  H   L   T H+V + +V  S  G+ ++  K NG +++CFQ
Sbjct: 288 FEAEHGLSL--QTQHWVTSFKVSFSQLGRAYQWYKVNGSIMRCFQ 330


>SB_51494| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 157

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 605 PFVRKQMYANAGGEAAAVGR--DECGASAATQPPRMPGP 715
           P VR Q YA    E  A+GR     GAS A  PP +P P
Sbjct: 59  PDVRMQRYAQLYNEYRAMGRLAQLPGASRAAPPPPVPEP 97


>SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 605 PFVRKQMYANAGGEAAAVGR--DECGASAATQPPRMPGP 715
           P VR Q YA    E  A+GR     GAS A  PP +P P
Sbjct: 19  PDVRMQRYAQIYNEYRAMGRLAQLPGASRAAPPPPVPEP 57


>SB_32809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 258 GMQKCDLSLVRSCYPRASLQRHPHSRHLRRQL--IKRIITTHSTSFLICPTCV 410
           G+ +C +S+++ C P+       +  H +  +  +  ++ +H   FL+C +CV
Sbjct: 36  GVDRCCISVLKICAPKREEGESYNFSHKQLFIGALAELLASHVFVFLVCASCV 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,510,780
Number of Sequences: 59808
Number of extensions: 527881
Number of successful extensions: 1138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)