Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D12
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein ( C.ele...    29   2.6  
L15201-2|AAA27945.2|  200|Caenorhabditis elegans Male abnormal p...    29   2.6  
AF277990-1|AAG00458.1|  200|Caenorhabditis elegans MAB-5 protein.      29   2.6  
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z83129-6|CAB63324.1|  101|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective spe...    28   7.8  
AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.8  

>M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein (
           C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
          Length = 211

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 270 WTGRDRWWLGVERTVSSSSHGSLAANM*VLTRTGQLVSFSLCPIQIIYR*YIRNSKAML 94
           WTG D +W G   T SS S  S  +     +      + +L   ++    Y+ N K ML
Sbjct: 18  WTGDDSYWAGAGTTASSQSASSGTSASASSSAAAAAAANNLKTYELYNHTYMNNMKHML 76


>L15201-2|AAA27945.2|  200|Caenorhabditis elegans Male abnormal
           protein 5 protein.
          Length = 200

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 270 WTGRDRWWLGVERTVSSSSHGSLAANM*VLTRTGQLVSFSLCPIQIIYR*YIRNSKAML 94
           WTG D +W G   T SS S  S  +     +      + +L   ++    Y+ N K ML
Sbjct: 7   WTGDDSYWAGAGTTASSQSASSGTSASASSSAAAAAAANNLKTYELYNHTYMNNMKHML 65


>AF277990-1|AAG00458.1|  200|Caenorhabditis elegans MAB-5 protein.
          Length = 200

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 270 WTGRDRWWLGVERTVSSSSHGSLAANM*VLTRTGQLVSFSLCPIQIIYR*YIRNSKAML 94
           WTG D +W G   T SS S  S  +     +      + +L   ++    Y+ N K ML
Sbjct: 7   WTGDDSYWAGAGTTASSQSASSGTSASASSSAAAAAAANNLKTYELYNHTYMNNMKHML 65


>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical protein
            F16A11.3b protein.
          Length = 1364

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 398  QKTFCFCIVNCLRQACSGGLFWEYWFVLNASRLVEDHLAYAKRGQAE 258
            ++TFCF     LR     G+ + Y+F     +L +D +   +    E
Sbjct: 1072 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1118


>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical protein
            F16A11.3a protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 398  QKTFCFCIVNCLRQACSGGLFWEYWFVLNASRLVEDHLAYAKRGQAE 258
            ++TFCF     LR     G+ + Y+F     +L +D +   +    E
Sbjct: 1198 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1244


>Z83129-6|CAB63324.1|  101|Caenorhabditis elegans Hypothetical
           protein W06G6.10 protein.
          Length = 101

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 434 CPTWMHSGVFFFQKTFCFCIVNCLRQACSG 345
           C + MH  + FF +  C C   C++  C G
Sbjct: 72  CCSCMHGVLRFFAELCCNCCAGCVQGICQG 101


>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical protein
            F16A11.3b protein.
          Length = 1364

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 398  QKTFCFCIVNCLRQACSGGLFWEYWFVLNASRLVEDHLAYAKRGQAE 258
            ++TFCF     LR     G+ + Y+F     +L +D +   +    E
Sbjct: 1072 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1118


>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical protein
            F16A11.3a protein.
          Length = 1490

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 398  QKTFCFCIVNCLRQACSGGLFWEYWFVLNASRLVEDHLAYAKRGQAE 258
            ++TFCF     LR     G+ + Y+F     +L +D +   +    E
Sbjct: 1198 RQTFCFICAQILRDKQCDGIQFRYFFATPLQQLAQDKVPNVRLASCE 1244


>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 229 RVIIFSRFAC--CEYVSLNAYWATCVVFIMSDPNYIQIIYKKLESN 98
           R++IF RF+   C+ +    Y A C ++    P  +  I KKL+ N
Sbjct: 95  RILIFQRFSVIFCDIL----YIAVCALYSFRSPRLVSRIPKKLQQN 136


>AF003139-7|AAB54162.2|  512|Caenorhabditis elegans Defective
           spermatogenesis protein 8 protein.
          Length = 512

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 11  FIRE-DQRVSVRSSNIVKFYLFLRLKRPINIAFEF 112
           F+RE +  +++   N++KFY    +K PI I  EF
Sbjct: 265 FLREANVMLTLSHPNVIKFYGVCTMKEPIMIVMEF 299


>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 134 IWIGHNENDTSCPVRVKTHIFAASEP*EDDDTVRSTPSHHRSRPVHV*RTPDDPQPV*TR 313
           I I H E+D   PV++   ++ A++  E D  +R   S +      + R P+ P+ +   
Sbjct: 272 IIILHAEDDKILPVKLGRALYEAAKDAERDIKIREFSSDYGLGHKFICRYPELPEIIEEF 331

Query: 314 LGQTSTPRT 340
           +G  + P T
Sbjct: 332 VGSVTPPST 340


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,728
Number of Sequences: 27780
Number of extensions: 309631
Number of successful extensions: 740
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)