Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D11
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    95   9e-21
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    33   0.043
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   3.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   4.9  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   6.5  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   8.6  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 95.5 bits (227), Expect = 9e-21
 Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 19/236 (8%)
 Frame = +1

Query: 76  ASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAAL 255
           A + +PN +  +ADDLGW+DV   GS +I TPN++ L   G+ L N++T+  CSP+R+ L
Sbjct: 7   AESKKPNFLVIVADDLGWSDVSPFGS-EIHTPNIERLAKEGVRLTNFHTASACSPTRSML 65

Query: 256 MTGK--------YPIHTGMQHSVIYGAEP--RGLPLNEKI--LPQYLKDLGYKTHLVGKW 399
           ++G             T  + S ++G +P   G  LN+++  LP+ L++ GY T + GKW
Sbjct: 66  LSGTDNHIAGLGQMAETVRRFSKVWGGKPGYEGY-LNDRVAALPEILQEAGYYTTMSGKW 124

Query: 400 HLGSYKKEYLPLNRGFDSHVGFWTGRIDMYDHTTMEQGSWGTDFRRG-FEVAHD------ 558
           HLG     Y P  RGF        G  + + +    + +    F    +   HD      
Sbjct: 125 HLGLTPDRY-PSKRGFKESFALLPGGGNHFAYEPGTRENPAVPFLPPLYTHNHDPVDHKS 183

Query: 559 LFGVYATDVYTDEAIKVVNSHNKSEPLFLMVAHSAVHSGNPYEPIRAPQKLIDAFK 726
           L   Y+++ + ++ I  + +  KS+  F  +  +A     P+ P+++P++ I+ ++
Sbjct: 184 LKNFYSSNYFAEKLIDQLKNREKSQSFFAYLPFTA-----PHWPLQSPKEYINKYR 234



 Score = 35.5 bits (78), Expect = 0.011
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 754 FAAVLSKLDESVGKVVKALHTRGLLXNSIXVFXTDNG 864
           +AA++  LD ++G+V+  L T G L N+  +F +DNG
Sbjct: 293 YAAMVELLDLNIGRVIDYLKTIGELDNTFVIFMSDNG 329


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 33.5 bits (73), Expect = 0.043
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = +1

Query: 106 FLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAALMTGKYPIHTG 285
           F  D+   + V  H   ++P+ N  S  ++ L       SPIC+ S  +    ++  HT 
Sbjct: 603 FQGDNRSPSTVIPHTQTEVPSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYHTS 662

Query: 286 MQHSVIYGAEPRGLPLNEKILPQYLKDLG----YKTH 384
           +  S+ + + P  L   +   P ++ + G    YK H
Sbjct: 663 LSKSLEHSSTPASLQATKTPSPSFVLEPGIPQEYKKH 699


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 651 HHQEQGLAFIVRIYHFNSFVGVDIC 577
           HH    +  I +  H+ SFVG D+C
Sbjct: 127 HHSRVSMRCIRKFDHYCSFVGKDVC 151


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 763 PLQISAWQSRRCT*RRLSASAGRGSVRKGCRCARPSG 653
           PL I+A    +CT   + +++ +G  R  C   RP G
Sbjct: 650 PLAIAAITGTKCTVPNIGSASLQGDARFACDVLRPMG 686


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 750 LPGRVVDVLEGVYQLLRGADRFVRVAA--VHGRVGHHQEQGLAF 625
           LPG  V V EG+  + +G D    V A     +V  H  + +AF
Sbjct: 168 LPGGKVFVFEGILPMCKGEDGLAAVLAHETAHQVARHSAEKIAF 211


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 127 WNDVGFHG--SNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAALMT 261
           WN+ G     SN +   NL++   +   L   YT+ I SP   ++MT
Sbjct: 47  WNNSGRRNGFSNNVELFNLEARSGASAFLLGSYTAAISSPGVYSMMT 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,975,099
Number of Sequences: 5004
Number of extensions: 89252
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)