Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D11
(917 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346... 34 0.18
01_01_0139 + 1263356-1264273 33 0.42
09_04_0346 - 16883380-16883487,16883570-16883685,16883935-168841... 29 3.9
05_03_0140 - 8854929-8855201 29 3.9
10_08_0108 + 14860469-14861032 29 5.2
07_03_1477 + 26826661-26827019,26827218-26827338,26827813-268279... 29 5.2
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 29 6.8
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029 29 6.8
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 29 6.8
02_05_0795 - 31792231-31794780 29 6.8
05_04_0145 - 18391112-18392461,18392545-18392637 28 9.0
>07_03_1523 +
27432991-27433199,27433585-27434185,27434468-27434642,
27434686-27436418,27436871-27437317
Length = 1054
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 149 PWKPTSFQPRSSAKKKIILGLVADATPNITISTNHDISSQKRISESSA 6
PW+P + PRS+ + G+ ADATP + + D + + + A
Sbjct: 167 PWRPRAAAPRSALARSTFRGVRADATPAVQLPGRRDGADASETTSTDA 214
>01_01_0139 + 1263356-1264273
Length = 305
Score = 32.7 bits (71), Expect = 0.42
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 155 LEPWKPTSFQPRSSA-KKKIILGLVADATPNITIS 54
L PW+P+S +PRSSA ++ G + TP+ T S
Sbjct: 103 LAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTS 137
>09_04_0346 -
16883380-16883487,16883570-16883685,16883935-16884119,
16884370-16884486,16884795-16884850
Length = 193
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 393 EMASRELQKGIFASESRVR*SRRFLDW--KDRHVRPHDHGAGLVGNRLQERFRG 548
EMA + +KG SE RVR S+R +W K R R G G G +E+ G
Sbjct: 113 EMAYGQEEKG---SEVRVRSSKRTRNWLDKKRRTRTRQQGKGKKGKSSKEQNNG 163
>05_03_0140 - 8854929-8855201
Length = 90
Score = 29.5 bits (63), Expect = 3.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 105 LFGGRSRLERCRLPRLQSD 161
+ GG+ ++ RCRLPR+Q D
Sbjct: 54 IMGGKGQIGRCRLPRVQCD 72
>10_08_0108 + 14860469-14861032
Length = 187
Score = 29.1 bits (62), Expect = 5.2
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +3
Query: 636 PVPDGGPLGR--AQRQPLRTDPRPAEADRRLQVHRRLCQAEICSGSIETGRVRRQSGQGS 809
P +GG G A P RPA R Q RRL E+ G+ E+G R ++G+G
Sbjct: 121 PALNGGQPGEEEAAGTPRVATARPAGTRERRQ--RRL---EVAGGTGESGGRRGEAGRGG 175
Query: 810 AHAGPLG 830
G LG
Sbjct: 176 VATGELG 182
>07_03_1477 +
26826661-26827019,26827218-26827338,26827813-26827962,
26828075-26828311
Length = 288
Score = 29.1 bits (62), Expect = 5.2
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 821 PRVCRALTTLPTDSSSFDRTAANFCL--AESSMYLKASISFCGARIGS*GLPL 669
PRV LT L F T FCL A S +L+ CGA++G G L
Sbjct: 87 PRVLHFLTRLSVQRVIFTETFIIFCLTVALSWTFLRELFLACGAQLGFEGFML 139
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 460 GFWT-GRIDMYDHTTMEQGS-WGTDFRRGFEVAHDLFGVYATDVYTDE 597
G W G+ D Y T +GS + +R+G H ++ Y DVY E
Sbjct: 179 GDWIDGKYDGYGVETWARGSRYRGQYRQGLRHGHGVYRFYTGDVYAGE 226
>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
Length = 927
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 112 ADDLGWNDVGFHGSNQIPTPNLD 180
+++L WN+V F G+N+I TP+LD
Sbjct: 337 SENLFWNEV-FKGANRIRTPDLD 358
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 603 NSFVGVDICGVDTEQIVSYLETSPEVGSPRALLHGRVVVHVDPSSPETDVTIEPSIQR 430
N VGV +CG D +I+ + + + G + + +H P+S E VT+ + ++
Sbjct: 481 NKVVGVHMCGEDAPEIIQGVAIAVKAGLTKQDFDATIGIH--PTSAEEFVTMRNATRK 536
>02_05_0795 - 31792231-31794780
Length = 849
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 463 FWTGRIDMYDHTTMEQGSWGTDF 531
FW GRID + H T + G G F
Sbjct: 564 FWDGRIDTFGHLTEDSGQRGEFF 586
>05_04_0145 - 18391112-18392461,18392545-18392637
Length = 480
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 40 MSWLVLIVILGVASATRPNIIFFLADDLGWNDVGFHGSNQIPTP 171
+++LVL+V+ G+ASA + I FL D HGS+ P+P
Sbjct: 10 IAFLVLVVMPGMASAGK--IPRFLPQQQPGRDGADHGSSNAPSP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,505,628
Number of Sequences: 37544
Number of extensions: 650935
Number of successful extensions: 1711
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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