Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D11
(917 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37548-1|AAA79198.2| 488|Caenorhabditis elegans Sulfatase domai... 175 3e-44
U37548-2|ABK57090.1| 452|Caenorhabditis elegans Sulfatase domai... 163 1e-40
U53180-8|AAA96290.1| 452|Caenorhabditis elegans Sulfatase domai... 83 2e-16
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 63 3e-11
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 30 2.0
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 29 3.5
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 29 3.5
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 29 3.5
U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protei... 29 4.7
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 29 4.7
Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical pr... 29 6.2
U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane r... 29 6.2
AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear recep... 29 6.2
AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear recep... 29 6.2
AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 29 6.2
AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell... 29 6.2
Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical p... 28 8.1
Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical p... 28 8.1
Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical p... 28 8.1
Z82282-10|CAB05277.2| 600|Caenorhabditis elegans Hypothetical p... 28 8.1
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U37548-1|AAA79198.2| 488|Caenorhabditis elegans Sulfatase domain
protein protein3, isoform a protein.
Length = 488
Score = 175 bits (427), Expect = 3e-44
Identities = 98/283 (34%), Positives = 156/283 (55%), Gaps = 15/283 (5%)
Frame = +1
Query: 70 GVASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGV--SGLMLHNYYTSPICSPS 243
G + +PN++F +ADDLG++DV + S + TPNL L + +L N Y + +C+P+
Sbjct: 24 GQTATQKPNVLFIMADDLGFSDVDWKDST-LHTPNLRHLAFHKNTALLSNSYVNQLCTPT 82
Query: 244 RAALMTGKYPIHTGMQHSVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKE 423
R+A MTG YP G Q+ V EP G+P L + ++ L Y T+LVGKWHLG KKE
Sbjct: 83 RSAFMTGYYPFRVGTQNGVFLHMEPAGVPTMFPFLSENMRQLDYSTYLVGKWHLGYCKKE 142
Query: 424 YLPLNRGFDSHVGFWTGRIDMYDHTTMEQGSWGTDFRRGFEVAHDLF-----------GV 570
+LP NRGFD GF+ + ++H+ + +G ++ ++ GV
Sbjct: 143 FLPTNRGFDYFYGFYGPQTGYFNHSADQYHRELKRVVKGLDLFEEVGSGKSVPDFSQNGV 202
Query: 571 YATDVYTDEAIKVVNSHNKSEPLFLMVAHSAVHSGNPYEPIRAPQKLIDAFKYIDDSARQ 750
Y+TD++TD A+ V+++HN S+P F+ +++ AVH P + K I K R
Sbjct: 203 YSTDLFTDVAMSVLDNHNNSKPFFMFLSYQAVH---PPLQVSQQSKTIGQGKEATFILRS 259
Query: 751 --KFAAVLSKLDESVGKVVKALHTRGLLXNSIXVFXTDNGGPA 873
+L+ +D ++G++V+ L L N++ VF +DNGG A
Sbjct: 260 HAHSTRMLTAMDFAIGRLVEYLKASNLYENTVIVFTSDNGGTA 302
>U37548-2|ABK57090.1| 452|Caenorhabditis elegans Sulfatase domain
protein protein3, isoform b protein.
Length = 452
Score = 163 bits (397), Expect = 1e-40
Identities = 94/270 (34%), Positives = 148/270 (54%), Gaps = 15/270 (5%)
Frame = +1
Query: 109 LADDLGWNDVGFHGSNQIPTPNLDSLGV--SGLMLHNYYTSPICSPSRAALMTGKYPIHT 282
+ADDLG++DV + S + TPNL L + +L N Y + +C+P+R+A MTG YP
Sbjct: 1 MADDLGFSDVDWKDST-LHTPNLRHLAFHKNTALLSNSYVNQLCTPTRSAFMTGYYPFRV 59
Query: 283 GMQHSVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKEYLPLNRGFDSHVG 462
G Q+ V EP G+P L + ++ L Y T+LVGKWHLG KKE+LP NRGFD G
Sbjct: 60 GTQNGVFLHMEPAGVPTMFPFLSENMRQLDYSTYLVGKWHLGYCKKEFLPTNRGFDYFYG 119
Query: 463 FWTGRIDMYDHTTMEQGSWGTDFRRGFEVAHDLF-----------GVYATDVYTDEAIKV 609
F+ + ++H+ + +G ++ ++ GVY+TD++TD A+ V
Sbjct: 120 FYGPQTGYFNHSADQYHRELKRVVKGLDLFEEVGSGKSVPDFSQNGVYSTDLFTDVAMSV 179
Query: 610 VNSHNKSEPLFLMVAHSAVHSGNPYEPIRAPQKLIDAFKYIDDSARQ--KFAAVLSKLDE 783
+++HN S+P F+ +++ AVH P + K I K R +L+ +D
Sbjct: 180 LDNHNNSKPFFMFLSYQAVH---PPLQVSQQSKTIGQGKEATFILRSHAHSTRMLTAMDF 236
Query: 784 SVGKVVKALHTRGLLXNSIXVFXTDNGGPA 873
++G++V+ L L N++ VF +DNGG A
Sbjct: 237 AIGRLVEYLKASNLYENTVIVFTSDNGGTA 266
>U53180-8|AAA96290.1| 452|Caenorhabditis elegans Sulfatase domain
protein protein 2 protein.
Length = 452
Score = 83.4 bits (197), Expect = 2e-16
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 8/136 (5%)
Frame = +1
Query: 79 SATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSP-ICSPSRAAL 255
S PNI+ + DDLG+ D+ +G +D + G Y++ +CSPSRA
Sbjct: 29 SPRHPNIVILMIDDLGYGDIASYGHPTQEYTQVDRMAAEGTRFTQAYSADSMCSPSRAGF 88
Query: 256 MTGKYPIHTGMQ--HSVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKE-- 423
+TG+ PI G+ V + GLP +E + + L++ GY T +VGKWHLG +
Sbjct: 89 ITGRLPIRLGIVGGRRVFVPYDIGGLPKSETTMAEMLQEAGYATGMVGKWHLGINENNAT 148
Query: 424 ---YLPLNRGFDSHVG 462
+LP RGF+ +VG
Sbjct: 149 DGAHLPSKRGFE-YVG 163
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 62.9 bits (146), Expect(2) = 3e-11
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 11/230 (4%)
Frame = +1
Query: 49 LVLIVILGVASA----TRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNY 216
L LI+ + V S ++ N+I L DD D+ + +P + Y
Sbjct: 17 LFLIIPIKVTSIHFVDSQHNVILILTDD---QDIELGSMDFMPKTSQIMKERGTEFTSGY 73
Query: 217 YTSPICSPSRAALMTGKY----PIHTGMQHSVIYGAEPRGLPLNEKILPQYLKDLGYKTH 384
T+PIC PSR+ ++TG Y +HT Q+ G E R + +K + YL++ GY+T
Sbjct: 74 VTTPICCPSRSTILTGLYVHNHHVHTNNQNCT--GVEWRKVH-EKKSIGVYLQEAGYRTA 130
Query: 385 LVGKWHLGSYKKEYLPLNRGFDSHVGFWTGRIDMYDHTTMEQGSWGTDFRRGFEVAHDLF 564
+GK +L Y Y+P G+D W + S G + G E D
Sbjct: 131 YLGK-YLNEYDGSYIP--PGWDE----WHAIVKNSKFYNYTMNSNGEREKFGSEYEKD-- 181
Query: 565 GVYATDVYTDEAIKVVNSHNKS---EPLFLMVAHSAVHSGNPYEPIRAPQ 705
Y TD+ T+ ++K ++ H K +P L++++ A H P +P APQ
Sbjct: 182 --YFTDLVTNRSLKFIDKHIKIRAWQPFALIISYPAPH--GPEDP--APQ 225
Score = 23.4 bits (48), Expect(2) = 3e-11
Identities = 11/53 (20%), Positives = 23/53 (43%)
Frame = +1
Query: 706 KLIDAFKYIDDSARQKFAAVLSKLDESVGKVVKALHTRGLLXNSIXVFXTDNG 864
K+ D D ++ L +DE + ++ L L N+ ++ +D+G
Sbjct: 258 KMNDVHISFTDLLHRRRLQTLQSVDEGIERLFNLLRELNQLWNTYAIYTSDHG 310
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 682 YEPIRAPQKLIDAFKYIDDSARQKFAAVLSKLDESVGKVVKAL 810
Y+ APQKL+DA ++DD K + L + + KAL
Sbjct: 169 YKSPMAPQKLVDALSWMDDETLTKITPKILGLRPNTYTLTKAL 211
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 29.5 bits (63), Expect = 3.5
Identities = 32/121 (26%), Positives = 47/121 (38%)
Frame = +1
Query: 514 SWGTDFRRGFEVAHDLFGVYATDVYTDEAIKVVNSHNKSEPLFLMVAHSAVHSGNPYEPI 693
SWG +R V D YAT+V+ + +K +N ++ FL + V N Y
Sbjct: 309 SWGMLKQRSRFVGKDSTVTYATNVFNNTRLKELNDNHS---YFLFSDNGTV---NRYGAE 362
Query: 694 RAPQKLIDAFKYIDDSARQKFAAVLSKLDESVGKVVKALHTRGLLXNSIXVFXTDNGGPA 873
+K ++A+ D R V L E +K +H I V D G A
Sbjct: 363 IIMRKRLEAYLAQGDKKRSAIPLVCVVL-EGGAFTIKMVHDYVTTIPRIPVIVCDGSGRA 421
Query: 874 A 876
A
Sbjct: 422 A 422
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 29.5 bits (63), Expect = 3.5
Identities = 32/121 (26%), Positives = 47/121 (38%)
Frame = +1
Query: 514 SWGTDFRRGFEVAHDLFGVYATDVYTDEAIKVVNSHNKSEPLFLMVAHSAVHSGNPYEPI 693
SWG +R V D YAT+V+ + +K +N ++ FL + V N Y
Sbjct: 309 SWGMLKQRSRFVGKDSTVTYATNVFNNTRLKELNDNHS---YFLFSDNGTV---NRYGAE 362
Query: 694 RAPQKLIDAFKYIDDSARQKFAAVLSKLDESVGKVVKALHTRGLLXNSIXVFXTDNGGPA 873
+K ++A+ D R V L E +K +H I V D G A
Sbjct: 363 IIMRKRLEAYLAQGDKKRSAIPLVCVVL-EGGAFTIKMVHDYVTTIPRIPVIVCDGSGRA 421
Query: 874 A 876
A
Sbjct: 422 A 422
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 29.5 bits (63), Expect = 3.5
Identities = 32/121 (26%), Positives = 47/121 (38%)
Frame = +1
Query: 514 SWGTDFRRGFEVAHDLFGVYATDVYTDEAIKVVNSHNKSEPLFLMVAHSAVHSGNPYEPI 693
SWG +R V D YAT+V+ + +K +N ++ FL + V N Y
Sbjct: 296 SWGMLKQRSRFVGKDSTVTYATNVFNNTRLKELNDNHS---YFLFSDNGTV---NRYGAE 349
Query: 694 RAPQKLIDAFKYIDDSARQKFAAVLSKLDESVGKVVKALHTRGLLXNSIXVFXTDNGGPA 873
+K ++A+ D R V L E +K +H I V D G A
Sbjct: 350 IIMRKRLEAYLAQGDKKRSAIPLVCVVL-EGGAFTIKMVHDYVTTIPRIPVIVCDGSGRA 408
Query: 874 A 876
A
Sbjct: 409 A 409
>U80444-2|AAB37788.1| 305|Caenorhabditis elegans Collagen protein
58 protein.
Length = 305
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Frame = -2
Query: 691 SVRKGCRCARPSGPPSGTGA----RFYC 620
+ +GC C P GPP G RFYC
Sbjct: 95 TANRGCNCRGPPGPPGFNGEDGCNRFYC 122
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 642 PDGGPLGRAQRQPLRTDPRPAEADRRLQVHRRLCQAEICSGSIETGRVRRQSGQGSAHAG 821
P GP G AQ+QP P Q+ +++ GS+ G + GQGS G
Sbjct: 1059 PSNGPHGSAQQQPHSLQNGPRNTYGMDQMTQQMSHMS-TQGSMAQGSM----GQGSMSQG 1113
Query: 822 PLG 830
P+G
Sbjct: 1114 PIG 1116
>Z82259-1|CAB05126.3| 437|Caenorhabditis elegans Hypothetical
protein C28D4.1 protein.
Length = 437
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 132 VPAEIVRQKENYIRSSSRR-DTQYHNQH*PRHL 37
+P +I ++ R + R+ D QYH QH P H+
Sbjct: 404 LPYDIHASDSHFARKNRRKSDNQYHQQHVPLHI 436
>U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane
receptor protein.
Length = 525
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 40 MSWLVLIVILGVASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYY 219
++WL+L+ ++GV + + +DL +N F N + + S ++ +
Sbjct: 10 VTWLLLLFVIGVDGQRCQKVDHEMCNDLPYNLTSF--PNLVDEESWKDASES-ILTYKPL 66
Query: 220 TSPICSPSRAALMTGKY-PIHTGMQHSVIYGAEPRGLPLNEKILPQYLKDLGYK 378
S +CS + Y P+ + I P L + EK LP L+ G+K
Sbjct: 67 LSVVCSEQLKFFLCSVYFPMCNEKLANPIGPCRPLCLSVQEKCLP-VLESFGFK 119
>AY305849-1|AAR11993.1| 437|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 437
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 132 VPAEIVRQKENYIRSSSRR-DTQYHNQH*PRHL 37
+P +I ++ R + R+ D QYH QH P H+
Sbjct: 404 LPYDIHASDSHFARKNRRKSDNQYHQQHVPLHI 436
>AY204184-1|AAO39188.1| 353|Caenorhabditis elegans nuclear receptor
NHR-100 protein.
Length = 353
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 132 VPAEIVRQKENYIRSSSRR-DTQYHNQH*PRHL 37
+P +I ++ R + R+ D QYH QH P H+
Sbjct: 320 LPYDIHASDSHFARKNRRKSDNQYHQQHVPLHI 352
>AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell
migration protein1, isoform b protein.
Length = 529
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 40 MSWLVLIVILGVASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYY 219
++WL+L+ ++GV + + +DL +N F N + + S ++ +
Sbjct: 10 VTWLLLLFVIGVDGQRCQKVDHEMCNDLPYNLTSF--PNLVDEESWKDASES-ILTYKPL 66
Query: 220 TSPICSPSRAALMTGKY-PIHTGMQHSVIYGAEPRGLPLNEKILPQYLKDLGYK 378
S +CS + Y P+ + I P L + EK LP L+ G+K
Sbjct: 67 LSVVCSEQLKFFLCSVYFPMCNEKLANPIGPCRPLCLSVQEKCLP-VLESFGFK 119
>AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell
migration protein1, isoform a protein.
Length = 525
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Frame = +1
Query: 40 MSWLVLIVILGVASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYY 219
++WL+L+ ++GV + + +DL +N F N + + S ++ +
Sbjct: 10 VTWLLLLFVIGVDGQRCQKVDHEMCNDLPYNLTSF--PNLVDEESWKDASES-ILTYKPL 66
Query: 220 TSPICSPSRAALMTGKY-PIHTGMQHSVIYGAEPRGLPLNEKILPQYLKDLGYK 378
S +CS + Y P+ + I P L + EK LP L+ G+K
Sbjct: 67 LSVVCSEQLKFFLCSVYFPMCNEKLANPIGPCRPLCLSVQEKCLP-VLESFGFK 119
>Z95559-14|CAJ76976.1| 338|Caenorhabditis elegans Hypothetical
protein Y41E3.7c protein.
Length = 338
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 648 GGP--LGRAQRQPLRTDPRPAEADRRLQVHRRLCQAEICSGS 767
GGP + Q R DP D + V+RR C E+ +GS
Sbjct: 264 GGPGDVEAGAMQTRRVDPNKPRQDEIIPVYRRDCHEEVYAGS 305
>Z95559-12|CAJ43917.1| 396|Caenorhabditis elegans Hypothetical
protein Y41E3.7b protein.
Length = 396
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 648 GGP--LGRAQRQPLRTDPRPAEADRRLQVHRRLCQAEICSGS 767
GGP + Q R DP D + V+RR C E+ +GS
Sbjct: 322 GGPGDVEAGAMQTRRVDPNKPRQDEIIPVYRRDCHEEVYAGS 363
>Z95559-11|CAB09005.2| 435|Caenorhabditis elegans Hypothetical
protein Y41E3.7a protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 648 GGP--LGRAQRQPLRTDPRPAEADRRLQVHRRLCQAEICSGS 767
GGP + Q R DP D + V+RR C E+ +GS
Sbjct: 361 GGPGDVEAGAMQTRRVDPNKPRQDEIIPVYRRDCHEEVYAGS 402
>Z82282-10|CAB05277.2| 600|Caenorhabditis elegans Hypothetical
protein T07G12.6 protein.
Length = 600
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 470 LEGSTCTTTRPWSRARGEPTSGE--VSR*LTICSVSTPQMSTP 592
+EGS CT RP S E ++ E V T+ + P+ STP
Sbjct: 44 MEGSVCTNPRPESSTHSEESTIEPVVPLSTTLATNKLPRFSTP 86
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = -3
Query: 657 VGHHQEQGLAFIVRIYHFNSFVGVDICGVDTEQIVSYLETSPEVGSPRALLHGRVVVHVD 478
V H+E+ +V + VGV + GV +++++ + +G+ + V +H
Sbjct: 385 VTKHKEKAAMKLVCVGKDEKVVGVHVFGVGSDEMLQGFAVAVTMGATKKQFDQTVAIH-- 442
Query: 477 PSSPETDVTIEPSIQ 433
P+S E VT+ ++
Sbjct: 443 PTSAEELVTMRGGVK 457
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 28.3 bits (60), Expect = 8.1
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = -3
Query: 657 VGHHQEQGLAFIVRIYHFNSFVGVDICGVDTEQIVSYLETSPEVGSPRALLHGRVVVHVD 478
V H+E+ +V + VGV + GV +++++ + +G+ + V +H
Sbjct: 399 VTKHKEKAAMKLVCVGKDEKVVGVHVFGVGSDEMLQGFAVAVTMGATKKQFDQTVAIH-- 456
Query: 477 PSSPETDVTIEPSIQ 433
P+S E VT+ ++
Sbjct: 457 PTSAEELVTMRGGVK 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,393,266
Number of Sequences: 27780
Number of extensions: 519627
Number of successful extensions: 1464
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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