Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D11
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    25   0.96 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    25   0.96 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   9.0  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 487 YDHTTMEQGSWGTDFR-RGFEVAHDL---FGVYATDVYTDEAIKVVNSHNKSEPLFLMVA 654
           YD   +E+G      + R +++   L   +G +  D+YT+E++  ++S      + L + 
Sbjct: 31  YDFYPLERGELTNSGKMREYQLGQFLRERYGDFLGDIYTEESVSALSSFYDRTKMSLQLV 90

Query: 655 HSAVHSGN 678
            +A++  N
Sbjct: 91  LAALYPPN 98


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 487 YDHTTMEQGSWGTDFR-RGFEVAHDL---FGVYATDVYTDEAIKVVNSHNKSEPLFLMVA 654
           YD   +E+G      + R +++   L   +G +  D+YT+E++  ++S      + L + 
Sbjct: 46  YDFYPLERGELTNSGKMREYQLGQFLRERYGDFLGDIYTEESVSALSSFYDRTKMSLQLV 105

Query: 655 HSAVHSGN 678
            +A++  N
Sbjct: 106 LAALYPPN 113


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 241 SRAALMTGKYPIHTGMQHSVIYGAEPRGLPLNEKILPQYL 360
           ++A   T  Y ++ G  H+++ G +   + +N   LPQ +
Sbjct: 254 AKAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIM 293


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 398 GISGATKRNICL*IEGSIVTSVSGLEGSTCTTTRPW 505
           G  G  + ++ +  +GS +    G+ GSTC     W
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAW 117


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 187 GVSGL----MLHNYYTSPICSPSRAALMTGKYPIHTGMQHSVIY 306
           G+SG+    M +N Y SP+ S S   + T ++      Q+ + Y
Sbjct: 252 GISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -1

Query: 392 PTKCVL*PKSFKYCGSIFSLRGKPRGSAPYITLCC 288
           P KC +  K+F   G +        G  PY+   C
Sbjct: 175 PHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 187 GVSGL----MLHNYYTSPICSPSRAALMTGKYPIHTGMQHSVIY 306
           G+SG+    M +N Y SP+ S S   + T ++      Q+ + Y
Sbjct: 252 GISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 187 GVSGL----MLHNYYTSPICSPSRAALMTGKYPIHTGMQHSVIY 306
           G+SG+    M +N Y SP+ S S   + T ++      Q+ + Y
Sbjct: 252 GISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
          protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 43 SWLVLIVILGVA 78
          +WL+L+V LG+A
Sbjct: 3  TWLLLVVCLGIA 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,009
Number of Sequences: 438
Number of extensions: 6675
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)