Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D09
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   1e-08
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  42   4e-04
SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)                     29   2.2  
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.0  
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +1

Query: 43  MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 156
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = +1

Query: 118  LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 291
            +H    G  F      + K ++K  +K+  +    V TR       K +   NVP+    
Sbjct: 750  IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809

Query: 292  XXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 411
                  N+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 810  RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 20/42 (47%), Positives = 25/42 (59%)
 Frame = +1

Query: 268 NVPFXXXXXXXXXXNDDEDSAHKLFTLVTYVPVASIKGLQTE 393
           NVP+          N+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_40840| Best HMM Match : ABC-3 (HMM E-Value=2.4)
          Length = 235

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -3

Query: 209 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 30
           VP C   +  +SL+AL      PT     C L   S V  S   D+P  S +GL++  LS
Sbjct: 46  VPTCSLID--LSLVALSVNLDVPT-----CSLFDLSLVALSMNLDVPTCSLIGLSLFALS 98

Query: 29  FVYRIPS 9
               +P+
Sbjct: 99  INLNVPT 105



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -3

Query: 209 VPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAIVILS 30
           VP C   +  +SL AL      PT     C L   S V  S   D+P  S + L++V LS
Sbjct: 141 VPTCSLID--VSLFALSVNLNVPT-----CSLIDLSLVALSINLDVPTCSLIDLSLVALS 193

Query: 29  FVYRIPS 9
               +P+
Sbjct: 194 INLDVPA 200


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 263 TPLDQRNLFKRVSTRMSGVPICFSANF 183
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 67  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 186
           K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 165 SNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPCEAFT 302
           S ++   ++   D   GH  +  ++Q PL     K  LPC    FT
Sbjct: 349 SKKKKQGIQGSADAEQGHHEQSLVRQRPLFAPLPKLRLPCQYNPFT 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,375
Number of Sequences: 59808
Number of extensions: 251498
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)