Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D05
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    33   0.053
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    29   0.65 
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   4.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   8.0  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +1

Query: 781 TIYATGGGAYKFEEDFIKEVNMRLSXMDEL 870
           T+ ATGGGAYKF +   K++++++   DE+
Sbjct: 135 TLIATGGGAYKFYDRMSKQLDIKVIREDEM 164


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 153 DDQEVWQQFSGAHTERIHTQPSRTTMCT*TEIPSTMVLDASSSL*GLPSGVRQRTPR 323
           DDQ   Q  S    E + +    T   T TE+P T++ D  +++  L    +QR PR
Sbjct: 3   DDQRDMQVDSVNQEENVDS--GETKQNTVTEVPRTVLQDVEANIAALMQATKQRDPR 57


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 507 WGYADEAGLLRAPRDEQTRTRQGDRSPEEYKK 602
           WG A + GLL     EQ ++ QG ++ EE +K
Sbjct: 194 WGNAIDLGLLVNATYEQLQSLQGQKAVEESQK 225


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 741 EESADLRSREPYEVQRAPAASYRYVLHLQMNVPSP 637
           E   +L +R P+ +  AP+  Y Y LH Q   P P
Sbjct: 139 ENFKNLEARSPF-ISEAPSRVYDYFLHNQDWSPKP 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,838
Number of Sequences: 5004
Number of extensions: 52006
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)