Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_D05
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0064 + 20627265-20627538,20628062-20628274,20628772-206288... 38 0.008
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 33 0.22
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 33 0.39
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 29 3.7
07_01_0224 - 1646114-1648396 29 6.4
06_03_1045 - 27111771-27112097,27112205-27112330,27112434-271126... 29 6.4
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 29 6.4
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 28 8.5
>09_06_0064 +
20627265-20627538,20628062-20628274,20628772-20628827,
20629417-20629533,20629701-20629820,20629910-20630004,
20630092-20630185,20630406-20630537,20631190-20631302,
20631423-20631657,20631950-20632028,20632029-20632161,
20632780-20632821,20632902-20632950,20633443-20633525,
20633686-20633802,20633893-20633956,20634334-20634486,
20635043-20635126,20635207-20635401,20635507-20635578,
20635599-20635610
Length = 843
Score = 38.3 bits (85), Expect = 0.008
Identities = 44/138 (31%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Frame = +1
Query: 499 MDIGGTLTKLVYFEPRETNRRELDKETEVLKNIRRYLTRNSAYGKTGRRDVHLQMENVTI 678
+DIGG+L KLVYF R DK L RR N GRR + +
Sbjct: 88 LDIGGSLIKLVYFS-RHAEHSSEDKRK--LSTKRRLGMLNG-----GRR-------SYPV 132
Query: 679 RGRRGTLHFIRFPTSEVGAFLQLARSK----GMADLVN----------TIYATGGGAYKF 816
G G LHF++F T ++ L SK G D + I ATGGGA+K+
Sbjct: 133 LG--GRLHFVKFETGKLNECLDFISSKQLHRGGVDSPSWRSGAQPDNIVIKATGGGAFKY 190
Query: 817 EEDFIKEVNMRLSXMDEL 870
+ F + + + L DE+
Sbjct: 191 ADLFKERLGVSLEKEDEM 208
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 790 ATGGGAYKFEEDFIKEVNMRLSXMDEL 870
A+GGGAYK+ EDF +++ + L +DE+
Sbjct: 108 ASGGGAYKYTEDFREKLGVCLDKVDEM 134
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 843 IHLLNEVLLELVRAPPCRVDCVHQIRHALRAGQLEESADL 724
+H E E V PC VD VH+ A+R+G + E+ DL
Sbjct: 598 VHSAEENSTESVEYHPCDVDDVHKPSSAVRSGGMSEALDL 637
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -1
Query: 645 PSPGLPVSRVPRQVSSYILQDFGLLVEFASVRLAGLEVDQLRQRTPNVHAEPGH 484
P P + ++R P + ++ + D LL + S A LEV R+PN A P +
Sbjct: 29 PQPSISLARTPSEGAAAAV-DLDLLEQLLSADNAWLEVAANTSRSPNFFATPSN 81
>07_01_0224 - 1646114-1648396
Length = 760
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 708 YEVQRAPAASYRYVL--HLQMNVPSPGLPVSRVPR 610
+ P S+ YVL MN P+P + +SR+PR
Sbjct: 336 FSAATGPLTSHYYVLGWSFAMNAPAPPIEISRLPR 370
>06_03_1045 -
27111771-27112097,27112205-27112330,27112434-27112673,
27113343-27113429,27113520-27113652,27113711-27113820,
27114308-27114424,27114526-27114610,27114693-27114796,
27115530-27115612,27115729-27115819
Length = 500
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 274 LHRCEGCLAACGRERRAALSSTPRPLIRTKLLKRARRNPYS 396
L RC+ L C E++ A ++TP T L+RA R+ S
Sbjct: 377 LQRCDDRLVDCAVEQKHAAAATPCDAELTSRLERATRSTIS 417
>05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 685 RRGTLHFIRFPTSEVGAFLQLAR--SKGMADLVNTIYATGG 801
R+G+L F F S VG + + R + G A++ + IYATGG
Sbjct: 901 RKGSLGFFFF-FSNVGGYQKTGRRFALGAAEMNSVIYATGG 940
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 271 RLHRCEGCLAACGRERRAALSSTPRPLIRTKLLKR 375
R + C CL+ C +R A+S P + +LLKR
Sbjct: 174 RCYGCGRCLSVCPYDRIRAMSYVRDPAMTAELLKR 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,764,518
Number of Sequences: 37544
Number of extensions: 402495
Number of successful extensions: 1360
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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