Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_D05
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-7|AAO26016.1|  403|Caenorhabditis elegans Pantothenate ki...    37   0.016
U88170-6|AAM15553.1|  392|Caenorhabditis elegans Pantothenate ki...    37   0.016
U88170-5|AAB42246.2|  449|Caenorhabditis elegans Pantothenate ki...    37   0.016
U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family pr...    30   2.5  

>U88170-7|AAO26016.1|  403|Caenorhabditis elegans Pantothenate
           kinase protein 1,isoform c protein.
          Length = 403

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 42/124 (33%), Positives = 62/124 (50%)
 Frame = +1

Query: 499 MDIGGTLTKLVYFEPRETNRRELDKETEVLKNIRRYLTRNSAYGKTGRRDVHLQMENVTI 678
           +DIGGTL K+VY    +    EL +E+     +  + TR  AY + G+R V +  +  T 
Sbjct: 72  VDIGGTLIKVVYSSVMD---EELPEES-----LNGH-TRKYAY-EDGKR-VLVNFKKFTD 120

Query: 679 RGRRGTLHFIRFPTSEVGAFLQLARSKGMADLVNTIYATGGGAYKFEEDFIKEVNMRLSX 858
             R     FI F   EV       R +G     + I+ TGGG+YK+ E  +KE+ +RL  
Sbjct: 121 MDR-----FINF-LKEVWT----DRKRG-----DVIHCTGGGSYKYSEIIMKELGVRLQR 165

Query: 859 MDEL 870
            DE+
Sbjct: 166 TDEM 169


>U88170-6|AAM15553.1|  392|Caenorhabditis elegans Pantothenate
           kinase protein 1,isoform b protein.
          Length = 392

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 42/124 (33%), Positives = 62/124 (50%)
 Frame = +1

Query: 499 MDIGGTLTKLVYFEPRETNRRELDKETEVLKNIRRYLTRNSAYGKTGRRDVHLQMENVTI 678
           +DIGGTL K+VY    +    EL +E+     +  + TR  AY + G+R V +  +  T 
Sbjct: 118 VDIGGTLIKVVYSSVMD---EELPEES-----LNGH-TRKYAY-EDGKR-VLVNFKKFTD 166

Query: 679 RGRRGTLHFIRFPTSEVGAFLQLARSKGMADLVNTIYATGGGAYKFEEDFIKEVNMRLSX 858
             R     FI F   EV       R +G     + I+ TGGG+YK+ E  +KE+ +RL  
Sbjct: 167 MDR-----FINF-LKEVWT----DRKRG-----DVIHCTGGGSYKYSEIIMKELGVRLQR 211

Query: 859 MDEL 870
            DE+
Sbjct: 212 TDEM 215


>U88170-5|AAB42246.2|  449|Caenorhabditis elegans Pantothenate
           kinase protein 1,isoform a protein.
          Length = 449

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 42/124 (33%), Positives = 62/124 (50%)
 Frame = +1

Query: 499 MDIGGTLTKLVYFEPRETNRRELDKETEVLKNIRRYLTRNSAYGKTGRRDVHLQMENVTI 678
           +DIGGTL K+VY    +    EL +E+     +  + TR  AY + G+R V +  +  T 
Sbjct: 118 VDIGGTLIKVVYSSVMD---EELPEES-----LNGH-TRKYAY-EDGKR-VLVNFKKFTD 166

Query: 679 RGRRGTLHFIRFPTSEVGAFLQLARSKGMADLVNTIYATGGGAYKFEEDFIKEVNMRLSX 858
             R     FI F   EV       R +G     + I+ TGGG+YK+ E  +KE+ +RL  
Sbjct: 167 MDR-----FINF-LKEVWT----DRKRG-----DVIHCTGGGSYKYSEIIMKELGVRLQR 211

Query: 859 MDEL 870
            DE+
Sbjct: 212 TDEM 215


>U11279-3|AAF99909.1|  423|Caenorhabditis elegans T box family
           protein 2 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 147 ESDDQEVWQQFSGAHTERIHTQPSR 221
           E D++E+WQQFS   TE + T+  R
Sbjct: 64  ELDERELWQQFSQCGTEMVITKSGR 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,476
Number of Sequences: 27780
Number of extensions: 307118
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)